| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 1 (0.020) | 40 (0.630) +GCC |
32/258 | NT | 97.6% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 1 (0.020) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
TGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555472‑5555755 | aggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CCGCAATTTcc > 2:248358‑M2/138‑149 (MQ=255) gaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCcgc < 8:251169‑M2/14‑1 (MQ=255) tcggcgtgggcagcgattagtggggcggacatcatcaactccttttgtcatgtgtcgccttcagcatagcatcagcgttgtggtgtgggagcggcgttgtgtcgggaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGcaa < 8:55923‑M2/24‑1 (MQ=255) ctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAAc < 5:218904‑M2/29‑1 (MQ=255) cagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcccgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTggg > 4:222845‑M2/116‑149 (MQ=255) gggcggtcttgagcaactccttttgtcatgtgtcgacgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTGCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAg < 4:253794‑M2/46‑1 (MQ=255) atgagcatctccttttgtcatgtgtcgccgacagaattgcaacaccgctctggtgtgggaggggccttgtgtcgctaatgggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATagcagccccaggt < 2:396236‑M2/54‑6 (MQ=255) cgatgtcctccttttgtcatggggcgccgacagcatagcaaccccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcgc < 6:17625‑M2/55‑1 (MQ=255) actccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtttagcgaaagggccgcatagcgggcC‑‑‑CGGCAATTTGCGCGTGTATGCAACAAACCAGGGGCTGCTATTCAGCCCGTTCGCgacaa > 6:109364‑M2/89‑147 (MQ=255) ctccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcgc > 5:17625‑M2/88‑142 (MQ=255) ccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAgg < 3:137597‑M2/64‑1 (MQ=255) tgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCca < 3:165205‑M2/68‑1 (MQ=255) atgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 6:419798‑M2/73‑1 (MQ=255) gCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGAGGCCTTGTTTAACGAACGGGCCGCCTATCCCCCACCGCAAATAACGCCTGTTATCAACAAACCATGGGGGGGTAAGGAGCCCTATAGCCACACAAGGCCCAACAAAGACcgcg > 6:365592/1‑149 (MQ=255) catagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACCAACCTGGGGCTGCTATGCAGCCCATTCGCGACACAAGGCCCACAAAGGACCGCGCaggcgta > 6:402210‑M2/62‑146 (MQ=255) atagcaacccgggtccggggtgggtggggccttgtgtcgccaacgggcggcattgcggccC‑‑‑CGGCAATTTCCGGGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGGGACACAAGGCCCACAAAGGACCGCGCAGGCTTc < 4:205280‑M2/88‑1 (MQ=255) tagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 3:180605‑M2/73‑1 (MQ=255) aacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcataacggccC‑‑‑CGGCAATTTACGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTAGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGccc > 3:66563‑M2/56‑149 (MQ=255) ccgctcaggtgtgggagcggccttgtgtcccgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa < 3:222845‑M2/98‑1 (MQ=255) ctcaggtgtgggagcggccttgtgtcgcgaaagggccgcctagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTg > 5:164980‑M2/49‑149 (MQ=255) gccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgc‑gcg > 1:238050‑M2/33‑148 (MQ=255) ccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgc‑gcg > 5:336913‑M2/32‑147 (MQ=255) ccttgtgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgc‑gcg > 2:404158‑M2/32‑147 (MQ=255) tgtcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGa < 2:68221‑M2/123‑1 (MQ=255) tcgcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgc > 2:44826‑M2/25‑149 (MQ=255) gcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGc > 1:205892‑M2/23‑114 (MQ=255) gcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTg < 3:374989‑M2/101‑1 (MQ=255) gcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTg > 4:374989‑M2/23‑123 (MQ=255) gcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgccg > 6:323382‑M2/23‑149 (MQ=255) gcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgccg > 2:326462‑M2/23‑149 (MQ=255) gcgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgcc < 1:363120‑M2/126‑1 (MQ=255) cgaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgccgc < 5:347571‑M2/128‑1 (MQ=255) gaaagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTCTGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAgccgcc < 2:238050‑M2/129‑1 (MQ=255) aagggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAg < 5:109364‑M2/131‑1 (MQ=255) cgggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGGCTCagctgcgcgcca < 7:261428‑M2/130‑5 (MQ=255) agggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGGCTCagctgcgcgcca > 8:261428‑M2/18‑143 (MQ=255) ggccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGat > 7:43376‑M2/16‑148 (MQ=255) gccgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGatca < 5:323382‑M2/135‑1 (MQ=255) cgcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGatcatc < 1:248358‑M2/137‑1 (MQ=255) gcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATcc < 8:43376‑M2/138‑1 (MQ=255) gcatagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCGTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATcc < 6:336913‑M2/138‑1 (MQ=255) tagcggccC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGc < 6:164980‑M2/141‑1 (MQ=255) cC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTg > 3:124926‑M2/2‑148 (MQ=255) | TGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGC‑‑‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555472‑5555755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |