New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6019270	31 (0.480)	3 (0.060)	3/218	NT	10.6%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6019300	25 (0.470)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase

TTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGC  >  NC_002947/6019153‑6019447                                                                                                                                                    |                                                                                                                                                    ttGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTc                                                                                                                                                    >  8:260100‑M2/1‑148 (MQ=255)      gcgcAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgt                                                                                                                                                >  2:287532‑M2/1‑143 (MQ=255)      gcgcAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgt                                                                                                                                                >  3:139758‑M2/1‑143 (MQ=255)      gcgcAGGGCCTGGAGGGCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATGGGTGGTGGATTATTCGCGGGCTTGGCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtg                                                                                                                                               >  8:67873‑M2/1‑143 (MQ=255)       cgcAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgg                                                                                                                                              >  2:402569‑M2/1‑142 (MQ=255)        gcAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtggg                                                                                                                                             >  4:135646‑M2/1‑141 (MQ=255)            ggCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcg                                                                                                                                         >  8:69366‑M2/1‑137 (MQ=255)                 ggAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGCATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcgggcaa                                                                                                                                    >  7:331441‑M2/1‑132 (MQ=255)                     gTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcgggcaagcc                                                                                                                                 >  4:81627‑M2/1‑128 (MQ=255)                        gATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTgctgtgggagcgggcaagcccgc                                                                                                                              <  3:20383‑M2/148‑24 (MQ=255)                                            gCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGt                                                                                                         >  8:98520/1‑149 (MQ=255)                                              aTAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcg                                                                                                                                         <  2:317682‑M2/115‑13 (MQ=255)                                              aTAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcg                                                                                                                                         >  1:317682‑M2/1‑103 (MQ=255)                                                    gCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTActgctg                                                                                                 <  8:357426/149‑1 (MQ=255)                                                        ccTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGTTTGCCCGCTCCCACAGGTGGTGCACAGCTTTCAAAAGCGGTGGTTTTCCTGTGGTAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGt                                                                                               <  4:394164/147‑1 (MQ=255)                                                         cTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAg                                                                                            >  3:35691/1‑149 (MQ=255)                                                                              aTCGGTGGTGGATTATTCGCGGGCTTCCCCGCACCCACAGGTCGTGCACAGATTTAAAAACCGGTGGTGTTCCTGTGGGAGCGGGAAAGCCAGCAAATGGGCCGGCACAGGCTGTAACTGATGGTTAGCCGGCGCGATTTGCCCGTgat                                                                       >  4:233699/1‑147 (MQ=255)                                                                                  gtggtgGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGc                                                                   <  7:98520/149‑1 (MQ=255)                                                                                                      ttGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCa                                                >  5:211546/1‑148 (MQ=255)                                                                                                          ccGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACg                                           >  6:17989/1‑149 (MQ=255)                                                                                                            gCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACgg                                          >  6:325798/1‑148 (MQ=255)                                                                                                             cTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGga                                        <  5:17989/149‑1 (MQ=255)                                                                                                              tCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACgg                                          >  3:108942/1‑146 (MQ=255)                                                                                                              tCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACgg                                          >  4:31031/1‑146 (MQ=255)                                                                                                                ccACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcgggcaagcccgcgaataatccaccaccgatttcaacccgaaccaccataaggcagccgctatgcgtcccgcccgcgccctgatcgacctccaggccctgc                                      <  5:125823‑M2/148‑112 (MQ=255)                                                                                                                ccACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcgggcaagcccgcgaataatccaccaccgatttcaacccgaaccaccataaggcagccgctatgcgtcccgcccgcgccctgatcgacctccaggccctgc                                      >  6:125823‑M2/1‑37 (MQ=255)                                                                                                                ccACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACg                                           >  1:167670/1‑143 (MQ=255)                                                                                                                ccACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACg                                           <  2:167670/143‑1 (MQ=255)                                                                                                                ccACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGga                                        <  4:108942/146‑1 (MQ=255)                                                                                                                  acaGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTcctgtgggagcgggcaagcccgcgaataatccaccaccgatttcaacccgaaccaccataaggcagccgctatgcgtcccgcccgcgccctgatcgacctccaggccctgcgcc                                   <  8:340604‑M2/149‑115 (MQ=255)                                                                                                                      gTCGTGCACAGCTTTCAAATTCGGTGGGGTTCGTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGGCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGatatgc                                 <  4:35691/147‑3 (MQ=255)                                                                                                                      gTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAg                               >  1:250155/1‑149 (MQ=255)                                                                                                                       tCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAgg                              >  3:237777/1‑149 (MQ=255)                                                                                                                           gCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCtt                          >  6:105230/1‑149 (MQ=255)                                                                                                                                  tttCAAAAGCGGTTGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACt                   <  3:233699/149‑1 (MQ=255)                                                                                                                                       aaaGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCt              >  5:187449/1‑149 (MQ=255)                                                                                                                                            ggtggtGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGc         >  7:39177/1‑149 (MQ=255)                                                                                                                                             gtggtgTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACATGCTGTTACTGCTGGt                                                                                               <  5:116197/62‑1 (MQ=255)                                                                                                                                             gtggtgTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGt                                                                                               >  6:116197/1‑62 (MQ=255)                                                                                                                                             gtggtgTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGG‑CACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGctt       >  7:163550/1‑149 (MQ=255)                                                                                                                                                gtgtTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGG‑CACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGcttctt    <  8:163550/149‑1 (MQ=255)                                                                                                                                                   ttCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCtt                                                                      >  7:30988/1‑81 (MQ=255)                                                                                                                                                   ttCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCtt                                                                      <  8:30988/81‑1 (MQ=255)                                                                                                                                                   ttCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTgc  <  6:187449/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGC  >  NC_002947/6019153‑6019447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.