Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,066,007 | G→C | 8.0% | F1019L (TTC→TTG) | mdtC ← | multidrug transporter membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,066,007 | 0 | G | C | 8.0% | 145.1 / 4.4 | 50 | F1019L (TTC→TTG) | mdtC | multidrug transporter membrane protein |
Reads supporting (aligned to +/- strand): ref base G (23/23); new base C (2/2); total (25/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.56e-01 |
AGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCTCAGCAGC > NC_002947/4065866‑4066148 | aGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGt < 5:400112/149‑1 (MQ=255) ggCCGCGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGGTGAATCGGTg > 3:382707/1‑149 (MQ=255) ggCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTg < 3:53367/149‑1 (MQ=255) ggCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTg < 2:302661/149‑1 (MQ=255) ccACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGGCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGATACGGTGgc < 2:320111/149‑1 (MQ=255) cacaACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAgg < 6:400042/149‑1 (MQ=255) aaCCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTCCAGGGCACGGTGAAGTGGGGGCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCgg < 7:143489/149‑1 (MQ=255) cACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggt < 7:63045/149‑1 (MQ=255) aCCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggta < 2:92652/149‑1 (MQ=255) ccGAGCTGGCGCGCTCCACGGCCACGTGTCAGTGCTTGAAGGCCAGGGTGATGTGGGGGCTGGCCAAATGTCATAGGGGGGTTTCCAGAGCGGCGTGGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtac < 8:131333/149‑1 (MQ=255) gAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGGGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTAGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCcaggtacag < 1:309209/149‑1 (MQ=255) ggCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTaaa < 5:51211/149‑1 (MQ=255) gcgcGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAac > 2:119324/1‑149 (MQ=255) cacggccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcg > 7:112794/1‑149 (MQ=255) acggccacggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgt > 7:120258/1‑149 (MQ=255) cggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgtcgt < 2:172139/145‑1 (MQ=255) cggGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGcgtcgt > 1:172139/1‑145 (MQ=255) aGTGATTGCAGGGCACGGTGAAGTGGGGTGTGGGAAAAAGTCATAGCGGGGTTTCCAGAGGGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAATGGGTg < 4:382707/149‑1 (MQ=255) gTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAATGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGt > 6:105752/1‑147 (MQ=255) gTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGa < 3:380078/149‑1 (MQ=255) aGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTgg < 8:120258/149‑1 (MQ=255) ggCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCt < 3:271750/149‑1 (MQ=255) ggCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCt > 2:134027/1‑149 (MQ=255) aCGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCAAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGaa > 4:382581/1‑149 (MQ=255) cGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAac < 3:189588/149‑1 (MQ=255) ggTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAaca > 3:147657/1‑149 (MQ=255) tGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAacac > 7:290187/1‑148 (MQ=255) gAAGTGGGGTCTGGGCAAAAGTCATAGCGCGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAacac > 1:365653/1‑147 (MQ=255) gTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCAcc > 5:207940/1‑148 (MQ=255) tGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCgat > 2:6757/1‑148 (MQ=255) gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGatgatg > 2:311117/1‑149 (MQ=255) gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGatgatg < 6:207940/149‑1 (MQ=255) gCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGatgatg > 1:102123/1‑149 (MQ=255) cAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATgg > 1:22126/1‑149 (MQ=255) aGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAggg < 5:250525/109‑1 (MQ=255) aGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAggg > 6:250525/1‑109 (MQ=255) gggTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGc > 1:107027/1‑149 (MQ=255) ggTGTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCt < 8:184322/149‑1 (MQ=255) agagCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCAt > 6:391511/1‑149 (MQ=255) cgTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTgcg < 4:147657/149‑1 (MQ=255) gTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTgcgc < 2:365653/149‑1 (MQ=255) ggTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCtt < 1:167888/149‑1 (MQ=255) gcctgcgcCACCGTTTCAACCGTTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTgg > 7:291059/5‑149 (MQ=255) gcctgcgcCACCGTTTCAACCGTTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTgg > 8:331736/5‑149 (MQ=255) cgcgCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCt > 1:278040/1‑148 (MQ=255) gcgcCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCt > 2:302733/1‑147 (MQ=255) gcCACCGTTTCAACCGTTGGCGCGGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCTcagc < 5:129947/149‑1 (MQ=255) gcCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCTcagc > 8:5642/1‑149 (MQ=255) ccACCGTTTCAACCGTTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCTcagca < 7:331736/149‑1 (MQ=255) aCGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCTCagcagc > 3:93512/1‑148 (MQ=255) | AGGCCACGCACAACCCGGCACCGAGCAGGCGCGAGCCACGGCCACGGGTCAGTGCTTGCAGGGCACGGTGAAGTGGGGTCTGGGCAAAAGTCATAGCGGGGTTTCCAGAGCGGCGTCGGTACGCACGCCGCGCCAACGGTTGAAACGGTGGCGCAGGCGGTCCAGGTACAGGTAAACCACCGGCGTCGTATAAAGGGTGAGGATCTGGCTGAACACCAGGCCACCGATGATGGTCAGGCCCAGCGGCTGACGCATTTCTGCGCCTTCAGCCTGGCTCAGCAGC > NC_002947/4065866‑4066148 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |