| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,439,787 | C→A | 8.4% | R233S (CGC→AGC) | PP_3934 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,439,787 | 0 | C | A | 8.4% | 276.6 / 9.7 | 90 | R233S (CGC→AGC) | PP_3934 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (41/41); new base A (4/4); total (45/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCTGGCCCTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGTCCAGTAGCGGCCA > NC_002947/4439644‑4439935 | atCTGGCCCTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTg > 5:270380/1‑149 (MQ=255) tCTGGCCCTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTgg > 2:245237/1‑149 (MQ=255) cTGGCCCTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTggg > 1:193920/1‑149 (MQ=255) cccTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCGGAGCCTGGGc > 4:101379/1‑146 (MQ=255) cccTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCGGAGCCTGGGc < 3:101379/146‑1 (MQ=255) ccTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCag > 4:365575/1‑149 (MQ=255) ccTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCCGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCGGAGCCTGGGcctgg < 8:236494/149‑5 (MQ=255) ctggctggCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAAGCCCAGGCGGAGCCTGGGcctggg < 2:323632/149‑6 (MQ=255) gctggcACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGG > 4:173268‑M1/1‑149 (MQ=255) cacaCCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCgg < 2:279622/149‑1 (MQ=255) acacCGCAACATCAGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGgt < 6:132430/149‑1 (MQ=255) ccGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTa < 2:193920/149‑1 (MQ=255) cGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTAc < 7:301081/149‑1 (MQ=255) cGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTAc > 4:266094/1‑149 (MQ=255) cGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTAc > 4:120153/1‑149 (MQ=255) aCATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACcaca < 7:155732/149‑1 (MQ=255) aCATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACcaca < 1:348101/149‑1 (MQ=255) aCATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACcaca < 5:357766/149‑1 (MQ=255) aTCCGGAAGACCTGGATGGACACACCTTGATCTTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGc < 4:83869/149‑1 (MQ=255) gAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCt > 8:205573/1‑149 (MQ=255) gACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGgc < 3:173268/149‑1 (MQ=255) cTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGg < 3:35156‑M2/149‑2 (MQ=255) atggaCACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGgcgcc > 1:95948‑M2/1‑144 (MQ=255) tggaCACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGgccggcgccg < 3:365575/149‑1 (MQ=255) tggaCACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGgccggcgccg < 2:83971/149‑1 (MQ=255) acacacCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCa > 6:308009/1‑149 (MQ=255) cacacCTTGATCCTGCATACCGCTCCACTCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCcggccagggtgctgtggtacaccgcgcctcct < 4:70084‑M1/148‑33 (MQ=255) acacCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGGCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCAtc > 8:282946/1‑149 (MQ=255) acCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGTCCCAGGCTCCGCCTGGGCTAAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCAtcgc > 8:381739/1‑149 (MQ=255) acCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTAc < 6:37022/120‑1 (MQ=255) acCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTAc > 5:37022/1‑120 (MQ=255) acCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCAtcg > 7:219778/1‑148 (MQ=255) gATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCAtcgctcg < 5:308009/147‑1 (MQ=255) gATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCAtcgctcg < 6:270380/147‑1 (MQ=255) tCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCtt < 3:229420/149‑1 (MQ=255) tCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCtt > 7:371883/1‑149 (MQ=255) tCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCtt > 2:170031/1‑149 (MQ=255) ccTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCcggccagggtgctgtggtacaccgcgcctc < 8:164132‑M1/135‑31 (MQ=255) ccTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCcggccagggtgctgtggtacaccgcgcctc > 7:164132‑M1/1‑105 (MQ=255) ccTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTg > 1:362838/1‑149 (MQ=255) cTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCCGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCAtcgctcgc < 6:233451/144‑1 (MQ=255) cTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCAtcgctcgc > 5:233451/1‑144 (MQ=255) tGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTgcc > 5:236641/1‑149 (MQ=255) tGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCGGAGCCTgg < 7:323478/90‑1 (MQ=255) tGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCGGAGCCTgg > 8:323478/1‑90 (MQ=255) gCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTgccg > 6:298238/1‑149 (MQ=255) tACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCt < 6:236641/149‑1 (MQ=255) aCCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTg > 8:250099/1‑149 (MQ=255) cgcgCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACcaca < 2:265510/107‑1 (MQ=255) cgcgCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACcaca > 1:265510/1‑107 (MQ=255) cGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGa < 5:110549/149‑1 (MQ=255) gCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGaa < 5:298238/149‑1 (MQ=255) gCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGaa < 5:359985/149‑1 (MQ=255) aTCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTAc > 5:159461/1‑93 (MQ=255) aTCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTAc < 6:159461/93‑1 (MQ=255) tCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAg > 5:192575/1‑147 (MQ=255) tCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAg < 6:192575/147‑1 (MQ=255) cTCAAGGCCTGGCACTTTTGCCACTATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGca > 7:250908/1‑147 (MQ=255) tCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAg > 1:215723/1‑149 (MQ=255) aCTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAg < 4:104613/143‑1 (MQ=255) aCTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAg > 3:104613/1‑143 (MQ=255) ttttGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGgcgc > 4:242485‑M2/1‑91 (MQ=255) ttttGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGgcgc < 3:242485‑M2/95‑5 (MQ=255) ttttGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGgccggccg > 7:269501/1‑149 (MQ=255) ttttGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGgccggccg > 5:245499/1‑149 (MQ=255) gCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTg > 3:266682/1‑149 (MQ=255) ccACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTg < 7:205573/148‑1 (MQ=255) cacaATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGt > 4:163661/1‑149 (MQ=255) aTGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCgg < 1:245237/149‑1 (MQ=255) ccAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCTCAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGgtgt > 6:159429/1‑149 (MQ=255) ccAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGgtgt > 5:328735/1‑149 (MQ=255) gATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGcc > 2:116787/1‑149 (MQ=255) aTCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGccc < 3:192925/149‑1 (MQ=255) tCACCAGCCTTCGCCGCAGGGCCATGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTgc < 6:113764/94‑1 (MQ=255) tCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTgc > 5:113764/1‑94 (MQ=255) ccAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAGGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAg > 6:157812/1‑149 (MQ=255) cAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGgtg < 4:245137/139‑1 (MQ=255) cAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGgtg > 3:245137/1‑139 (MQ=255) gCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCTCAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCtt < 5:159429/148‑1 (MQ=255) gCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCtt < 7:250099/148‑1 (MQ=255) gCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCtt < 8:250908/148‑1 (MQ=255) ctcctgagcccaggcGGAGCCTGGGC‑CTGG‑GGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGAc > 8:223979/8‑149 (MQ=255) ccccAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGa < 6:245499/149‑1 (MQ=255) tgagcccaggcGGAGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCAGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGt > 8:295076/4‑149 (MQ=255) aggcccaggcTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGTc < 2:215723/149‑1 (MQ=255) gcccaggcTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAGGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGTCCa < 5:157812/149‑1 (MQ=255) gcccaggcTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGTc > 8:191683/1‑147 (MQ=255) caggcTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGTCCAGTa < 4:35156/149‑1 (MQ=255) ggcTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCa > 7:45896/1‑127 (MQ=255) ggcTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCa < 8:45896/127‑1 (MQ=255) cGCCTGGGCTGAGGAGGGGGGGTGTTCGACAGCTGCCTGGCCGGGGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGTCCAGTAGCGGCCa < 5:135717/149‑1 (MQ=255) | ATCTGGCCCTGGCTGGCACACCGCAACATCCGGAAGACCTGGATGGACACACCTTGATCCTGCATACCGCGCCACGCATCCTCAAGGCCTGGCACTTTTGCCACAATGACCAGATCACCAGCCTTCGCCCCAGGCCCAGGCTCCGCCTGGGCTCAGGAGGCGCGGTGTACCACAGCACCCTGGCCGGCGCCGGCATCGCTCGCCTTGCCGCCTGGGTCGGCGAAGCACAGGTCAAGGCCGGCCGCCTGGTGCGGGTGTGCCCGCAGTACCGCTTGACGTCCAGTAGCGGCCA > NC_002947/4439644‑4439935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |