Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,503,789 | C→T | 15.3% | intergenic (+38/‑60) | xanP → / → tusD | xanthine permease/sulfur transfer protein complex subunit TusD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,503,789 | 0 | C | T | 15.3% | 58.1 / 2.7 | 26 | intergenic (+38/‑60) | xanP/tusD | xanthine permease/sulfur transfer protein complex subunit TusD |
Reads supporting (aligned to +/- strand): ref base C (13/9); new base T (2/2); total (15/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATGCCGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCCGGCG > NC_002947/4503647‑4503936 | aTGCCGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTATCCCGCGCCCGCTTGCACAAgc > 6:231056/1‑149 (MQ=255) ccGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAgcgg < 4:163641/148‑1 (MQ=255) gcggcgATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGTGCAAgcgggcgc < 7:130093/149‑1 (MQ=255) cggcgATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAgcgggcgcg < 3:343200/149‑1 (MQ=255) gAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATg > 3:328958/1‑149 (MQ=255) gAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCCCGCCCGCATGCCCCAGCGGGCGCGGGCTTTTTTGGTTTATCATg > 6:226531/1‑149 (MQ=255) tggggTGTGGCTACCGGGTTGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGc < 5:226531/146‑1 (MQ=255) ggTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATc < 4:269337/140‑1 (MQ=255) ggTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATc > 3:269337/1‑140 (MQ=255) gCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCGTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCt > 4:307372/1‑149 (MQ=255) ttGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATAATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTcg > 5:409378/1‑149 (MQ=255) aCCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGAc < 4:328958/149‑1 (MQ=255) tGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCt < 6:299419/146‑1 (MQ=255) tGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTgag > 5:299419/1‑147 (MQ=255) tGAGAGTATCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTc < 5:231056/149‑1 (MQ=255) ccgcgcccgcTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCgg > 5:41557/1‑149 (MQ=255) cgcgcccgcTTGTGCAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTGCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCg < 5:391944/147‑1 (MQ=255) cgcgcccgcTTGTGCAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGAACCATTCCGTTGCATGAGGTAGCCATGAAATTCGCTTTCGCGGGGTTCTCCCCGGCCCCGGCGCCCTCTTCGCGACGCGCCCGGCGCGGCGCCGAGGCg > 6:391944/1‑147 (MQ=255) cgcgcccgcTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGt > 6:162244/1‑149 (MQ=255) cgcgcccgcTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGt > 8:47116/1‑149 (MQ=255) gcccgcTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCt > 6:208119/1‑149 (MQ=255) ccgcTTGTGCAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATGGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTgg > 8:344854/1‑149 (MQ=255) ccgcTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTgg > 6:8377/1‑149 (MQ=255) ttGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGa > 4:382381/1‑134 (MQ=255) ttGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGa < 3:382381/134‑1 (MQ=255) gCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCcgg < 5:208119/147‑1 (MQ=255) cacaAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCcggcg < 5:8377/148‑1 (MQ=255) | ATGCCGGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTTTTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGGCCGGCG > NC_002947/4503647‑4503936 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |