| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,520,454 | A→T | 6.7% | intergenic (+45/+27) | cspD → / ← icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,520,454 | 0 | A | T | 6.7% | 215.0 / 4.1 | 74 | intergenic (+45/+27) | cspD/icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (37/32); new base T (3/2); total (40/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01 | |||||||||||
CCCCAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGA > NC_002947/4520307‑4520602 | ccccAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTa > 5:233106/1‑148 (MQ=255) aGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGATGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAaagaa < 7:144566/149‑1 (MQ=255) gggCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAaagaag < 4:84966/149‑1 (MQ=255) ttGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGTTTATTAAGATGAAAGTACAGACAGCCTGCGCTGTGCCGATAGAAAAAAAAATAGGCCGCATATTTAAaag > 1:130567/1‑147 (MQ=255) cACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCgg > 5:61672/1‑149 (MQ=255) cGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGtt < 3:20681/149‑1 (MQ=255) cGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGtt > 7:27003/1‑149 (MQ=255) gCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGttt > 4:163825/1‑149 (MQ=255) ttGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAaagaag > 4:259225/1‑135 (MQ=255) ttGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAaagaag < 3:259225/135‑1 (MQ=255) tGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGt < 1:349672/149‑1 (MQ=255) aaaTCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCAGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGtt < 2:258317/148‑1 (MQ=255) aaTCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGc < 8:27003/149‑1 (MQ=255) tCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCt > 5:76926/1‑149 (MQ=255) cAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCt > 1:67756/1‑148 (MQ=255) aaaGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCtga > 5:343351/1‑147 (MQ=255) aGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACa > 6:335201/1‑149 (MQ=255) gATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACAt > 6:198846/1‑149 (MQ=255) cgcgGCCGCGGGGGATGAGGGTGCCTGCGCCTTGGGCTAGCCCAAACCCT‑‑‑A‑‑AACTGAAAACGCGTCAGTCCCTGCGCTGTGCCTTAACACAAAAAAATCGGCCGCTTCTTTAAAACAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGtt < 6:61672/149‑1 (MQ=255) gCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAt < 4:181185/149‑1 (MQ=255) tGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAttt > 6:2910/1‑149 (MQ=255) cGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTc < 6:76926/148‑1 (MQ=255) gCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATc > 3:319629/1‑149 (MQ=255) tctggCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGGCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGa < 8:56049/134‑1 (MQ=255) agagGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGc > 7:206097/1‑149 (MQ=255) agagGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAAACGGCCGCATCTTTAAAACAAG‑CGAACGGTTTTCTGTTGCCTTACATGTGtttta > 7:56049/1‑135 (MQ=255) gCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTCTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCaaa > 6:409164/1‑149 (MQ=255) cAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGTCGCTTCTTTTAAAGAAG‑CGGCCGAttttttt < 1:375212/109‑4 (MQ=37) cAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGTCGCTTCTTTTAAAGAAG‑CGGCCGAttttttt > 2:375212/1‑106 (MQ=37) cAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCt > 3:290789/1‑148 (MQ=255) gagCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCTAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAGCCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGa < 1:105182/149‑1 (MQ=255) gagCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAg > 2:54226/1‑149 (MQ=255) cTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAgctgc > 3:163871/1‑149 (MQ=255) ttGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCaaa > 7:378447/1‑137 (MQ=255) ttGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCaaa < 8:378447/137‑1 (MQ=255) gggCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCtt < 6:233106/148‑1 (MQ=255) gacccGCCAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGCGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAg < 4:319629/146‑1 (MQ=255) cGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAGAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTg > 8:331144/1‑149 (MQ=255) aaaGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCGTTACATGTGTTTGATAATTTCATCGCCAAAGCCTGAGCTGCTTACACGCTTGgcg > 8:355936/1‑149 (MQ=255) aaaGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGgcg < 5:335201/149‑1 (MQ=255) aaaGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGgcg < 4:163871/149‑1 (MQ=255) cG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCt > 7:202040/1‑149 (MQ=255) g‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCt > 3:242738/1‑148 (MQ=255) aCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCAt < 4:62871/149‑1 (MQ=255) aCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCAt < 4:242738/149‑1 (MQ=255) aaGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGc > 7:154309/1‑149 (MQ=255) gccggcctgcctgcTCTGTGCCGATAGACAACAAAAGCGGCCGCTTCTTTAAACGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTc < 6:343351/143‑1 (MQ=255) ccTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCg < 4:290789/149‑1 (MQ=255) cTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTg > 2:144154/1‑127 (MQ=255) cctgcGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCg > 1:2552/1‑147 (MQ=255) cctgcGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCg > 3:398029/1‑147 (MQ=255) ctgcGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGt < 2:308059/147‑1 (MQ=255) ctgcGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGt > 1:308059/1‑147 (MQ=255) tgtgCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACg > 2:160623/1‑149 (MQ=255) gATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTg < 5:183021/149‑1 (MQ=255) aTAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg > 4:101271/1‑149 (MQ=255) tAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGc < 4:79623/149‑1 (MQ=255) aCAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCg > 5:318029/1‑148 (MQ=255) cAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGc > 8:12443/1‑148 (MQ=255) aaaaaaTCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAAt < 1:54226/149‑1 (MQ=255) aaaaaTCGGTCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATg > 8:276896/1‑149 (MQ=255) aTCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGgcgc < 8:154309/149‑1 (MQ=255) tCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGcc < 6:410708/149‑1 (MQ=255) ggtcGCTTCTTTTAAAGAAG‑CGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCAt > 1:30046/4‑149 (MQ=255) gtcGCTTCTTTTAAAGAAG‑CGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAAt > 6:289271/3‑140 (MQ=255) gtcGCTTCTTTTAAAGAAG‑CGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAAt < 5:289271/138‑1 (MQ=255) gCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCAtt < 2:67756/149‑1 (MQ=255) ccGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTg < 8:202040/149‑1 (MQ=255) ccGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTg < 1:160623/149‑1 (MQ=255) gCTTCTTTAAAAGCAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGt < 3:373330/149‑1 (MQ=255) gCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGt > 8:229975/1‑149 (MQ=255) cttcttTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGTCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg > 6:347846/1‑129 (MQ=255) cttcttTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg < 5:347846/129‑1 (MQ=255) cttcttTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCACCATCAATCGCTCGAAATCGTAGGTCAAGGTCTTGGCCGCAATGCAGCCAATGGTg > 8:253593/1‑149 (MQ=255) tttAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCt > 6:156905/1‑149 (MQ=255) aaaaGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTtga > 7:119438/1‑149 (MQ=255) | CCCCAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCG‑‑‑A‑‑AACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTAAAAGAAG‑CGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGA > NC_002947/4520307‑4520602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |