Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,853,042 | C→T | 6.9% | A687T (GCT→ACT) | dnaX ← | DNA polymerase III subunit gamma |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,853,042 | 0 | C | T | 6.9% | 171.7 / 2.3 | 58 | A687T (GCT→ACT) | dnaX | DNA polymerase III subunit gamma |
Reads supporting (aligned to +/- strand): ref base C (27/27); new base T (2/2); total (29/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.13e-01 |
TCTTCTGCATTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTGCCGCCGCCTGAGCCGGG > NC_002947/4852895‑4853187 | tcttctGCATTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGc > 6:398681/1‑148 (MQ=255) ttctGCATTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCT‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAg > 1:69890/1‑149 (MQ=255) tGCATTTTTTCCTGCATCTGCTGGGACTGCTTCATCAGGCCGGCAATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGc > 7:129786/1‑149 (MQ=255) cATTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAggg < 6:74486/146‑1 (MQ=255) cATTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGc < 1:237529/147‑1 (MQ=255) cATTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTAAACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCtt < 6:37321/149‑1 (MQ=255) cATTTTTTCCTGCATCTGCTGGGCCTGCTACATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAggg < 6:132808/146‑1 (MQ=255) aTTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTc > 3:37661/1‑149 (MQ=255) ttttttCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTc > 5:163023/1‑148 (MQ=255) ttCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGGCTAGTCAGGGccagtaat < 7:50016/148‑8 (MQ=255) tCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAg < 5:339/148‑1 (MQ=255) tGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGGCTAGTCAGGGccag > 6:303453/1‑137 (MQ=255) tGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGGCTAGTCAGGGccag < 5:303453/140‑4 (MQ=255) tGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCt > 7:150368/1‑148 (MQ=255) gCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTc > 8:50120/1‑148 (MQ=255) cATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCaa < 1:175690/149‑1 (MQ=255) tgctgGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTGATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGt < 2:37717/149‑1 (MQ=255) ctgGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATa < 6:366807/145‑1 (MQ=255) cTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCa > 6:10850/1‑149 (MQ=255) aGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCT‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGgc < 2:69890/149‑1 (MQ=255) ggcgggccATTCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGgc < 8:129786/148‑1 (MQ=255) ccATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGaac < 6:163023/149‑1 (MQ=255) ccACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACt < 5:210117/148‑1 (MQ=255) aCCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGa < 5:133087/149‑1 (MQ=255) ccTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGat < 3:305829/149‑1 (MQ=255) cTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGat > 4:360887/1‑148 (MQ=255) atcatGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATct < 8:150368/148‑1 (MQ=255) atGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATctgct < 7:50120/148‑1 (MQ=255) taCCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAAc < 7:310110/148‑1 (MQ=255) cTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATctgc > 4:285447/1‑136 (MQ=255) cTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATctgc < 3:285447/136‑1 (MQ=255) cTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGAt > 5:362933/1‑149 (MQ=255) cTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGAt > 5:75760/1‑149 (MQ=255) cTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGAt > 1:68798/1‑149 (MQ=255) gATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCt > 6:134378/1‑149 (MQ=255) ggTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCtc > 1:405694/1‑148 (MQ=255) ggTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACATTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCtc > 8:161426/1‑148 (MQ=255) tCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCtcgat < 5:119716/149‑1 (MQ=255) tCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCtcgat > 6:119716/1‑149 (MQ=255) cATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCtcgatc > 7:224805/1‑149 (MQ=255) tgtgATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCtcgatcga > 2:264491/1‑149 (MQ=255) aTGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATcgacgc < 6:75760/148‑1 (MQ=255) aTGCGG‑CCGGCCCGGTGCCGGGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATcgacgc > 2:309964/1‑148 (MQ=255) gCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGc > 5:345726/1‑149 (MQ=255) cGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGt > 4:145624/1‑148 (MQ=255) cGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTc < 7:9831/149‑1 (MQ=255) cGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTc < 1:264491/149‑1 (MQ=255) ggccgCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCgctc > 4:240447/1‑149 (MQ=255) gccgCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCgctcg < 6:345726/149‑1 (MQ=255) gccgCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCgctcg < 1:355719/149‑1 (MQ=255) cATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCgctcggctc < 3:240447/149‑1 (MQ=255) cATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGATCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTgc > 3:199018/1‑149 (MQ=255) aTTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTgcc > 6:109194/1‑149 (MQ=255) gtagaagCCCTGGCTAGTCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTgccg > 2:192133/7‑149 (MQ=255) cTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTgccgcc < 2:405694/148‑1 (MQ=255) ccTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTGCCGCCGCCt > 1:113119/1‑147 (MQ=255) aCTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATAGAAGCGACGGAGTCCTGCTGGCGCTCGGCTCGCTTGCGTGCCGCCGCCTGAGCCg > 6:51290/1‑149 (MQ=255) tAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTGCCGCCGCCTGAGCCggg > 7:180841/1‑149 (MQ=255) gCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTGCCGCCGCCTGAGCCggg < 6:362933/147‑1 (MQ=255) | TCTTCTGCATTTTTTCCTGCATCTGCTGGGCCTGCTTCATCAGGCCGGCCATGCCACCTTTCATCATGGGGTATACCTCGATTGGGTCATGTGATGCGGCCCGGCACCGGGCC‑GGCCGCATGGTTATCCATTACTGGCCCTGACTAGCCAGGGCTTCTACAGGCTCAATAGTATCCTGCCGCACCTTGGCGCCGAACAACTTGATCATCTGCTGGATCAACGGATCCTGCTCGATCGACGCGACGGCGTCCTGCTGGCGCTCGGCTCGCTTGCGTGCCGCCGCCTGAGCCGGG > NC_002947/4852895‑4853187 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |