| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,936,628 | G→C | 5.4% | intergenic (‑39/‑379) | flhA ← / → PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,936,628 | 0 | G | C | 5.4% | 292.9 / 6.4 | 93 | intergenic (‑39/‑379) | flhA/PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (45/43); new base C (3/2); total (48/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
ATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTA > NC_002947/4936483‑4936775 | accatcatTGCCAACATCACCCCCAGCACCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTGGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGgcgc < 4:232046/147‑1 (MQ=255) catcatTGCCAACAGCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCt > 8:205197/1‑149 (MQ=21) ttGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCg < 3:2865/149‑1 (MQ=38) ttGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGCGGCGCCTGGGCg > 8:266693/1‑149 (MQ=38) gCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTGGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGt < 1:198428/148‑1 (MQ=38) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGCGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTTGACGCCCAGGGGGCGCCTGGGCGt < 1:211033/148‑1 (MQ=255) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑gg > 5:189484/1‑149 (MQ=40) aaCATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCt < 7:381613/149‑1 (MQ=255) cATCACCAGCCGCACCCGCGGCACCCCCCGGTTGCCCCGGCCGCGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCttt < 4:119200/149‑1 (MQ=14) aTCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTg < 8:156844/149‑1 (MQ=255) cagcagCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCt < 4:243173/141‑1 (MQ=255) cagcagCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCt > 3:243173/1‑141 (MQ=255) agcagcAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCg > 8:73881/1‑135 (MQ=38) agcagcAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCg < 7:73881/135‑1 (MQ=38) agcagcAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCaag > 4:249343/1‑147 (MQ=255) cagcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGt > 3:134237/1‑134 (MQ=39) cagcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGt < 4:134237/134‑1 (MQ=39) caACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCttt > 7:43945/1‑149 (MQ=255) aaCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTc > 2:397730/1‑149 (MQ=255) cAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCa < 6:189484/149‑1 (MQ=255) gCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACttt < 7:266693/149‑1 (MQ=255) cccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTgg > 4:105187/1‑146 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTcc > 8:307274/1‑137 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTcc < 7:307274/137‑1 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGa > 8:216027/1‑149 (MQ=255) aGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGAGTAACTGAGTGCGATCCACCGCGAGTCCTGTTGATGCAAAAC‑TTTGACGCCGAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAATAAGCTTTCCACCTTTGGCTGaca < 6:389825/149‑1 (MQ=14) ttGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑g > 4:129716/1‑113 (MQ=35) ttGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑g < 3:129716/113‑1 (MQ=35) ttGCCCCGCCCGAGCCCGGCCAGGTTGTTGCGCGCCATGC‑TGATAAACAGAGAGCGATCCACCGCGAGTCATCTTGATGCAAAAC‑TTTGACGACCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAACAAGCTTACCAACTAAGGCAGacaca > 8:170693/1‑147 (MQ=14) acctggCCGGGCTCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCcaca > 6:198245/5‑149 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGTCAAAGTTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCca > 5:354328/1‑149 (MQ=17) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac > 6:341935/1‑149 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac > 1:68827/1‑149 (MQ=255) gCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCCCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaaa < 1:158512/149‑1 (MQ=255) gAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa < 5:158199/149‑1 (MQ=255) gAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa < 2:68827/149‑1 (MQ=255) aGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGAt < 1:189982/149‑1 (MQ=255) aGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGAt > 2:189982/1‑149 (MQ=255) cccGGCCAGGTTGTTGCGGGCGTTGCGTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGAt > 1:4576/1‑148 (MQ=255) ccGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGaa > 3:146137/1‑149 (MQ=255) cGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTc < 7:348754/115‑1 (MQ=255) cGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTc > 8:348754/1‑115 (MQ=255) cGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCACAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAAc > 6:118548/1‑149 (MQ=255) ccAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCgg < 4:5984/149‑1 (MQ=255) gttgttGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGc > 3:128916/1‑147 (MQ=255) ttgCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGcac > 1:401533/1‑149 (MQ=255) gTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGt > 3:338814/1‑149 (MQ=255) ttGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGtt > 2:128817/1‑149 (MQ=255) aTTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACggg > 7:147454/1‑149 (MQ=255) ttAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGt < 5:198245/149‑1 (MQ=255) aCTGAGTGCGATCCACCGCGAGTGCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTTCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGATAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTgg < 6:270224/148‑1 (MQ=255) aCTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGc > 2:297531/1‑149 (MQ=255) aCTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGc < 8:43945/149‑1 (MQ=255) tGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACAAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCt > 6:243120/1‑148 (MQ=255) aGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCAt < 5:341935/149‑1 (MQ=255) gTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATg < 4:338814/149‑1 (MQ=255) tGCGATCCACCGCGAGTCCTCTTTATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGa < 2:404529/149‑1 (MQ=255) tGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGTAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCAt > 1:265692/1‑147 (MQ=255) tGCGATCCACCGCGAGTACTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCTT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGa < 7:170693/149‑1 (MQ=255) cGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagc < 7:216027/149‑1 (MQ=255) cGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGag > 4:392797/1‑148 (MQ=255) gATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACgg < 4:192402/135‑1 (MQ=255) gATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACgg > 3:192402/1‑135 (MQ=255) gATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagc > 4:20134/1‑148 (MQ=255) aTCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagcaa < 4:128916/149‑1 (MQ=255) tCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGTAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagcaag < 2:265692/149‑1 (MQ=255) gTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTCGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCaa < 1:128817/149‑1 (MQ=255) ctctTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGa > 4:90780/1‑148 (MQ=255) tGATGCAAAAC‑TTCGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGACGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAAc > 2:84843/1‑149 (MQ=255) gATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAg > 4:21741/1‑142 (MQ=255) gATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAg < 3:21741/142‑1 (MQ=255) gATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAAc > 1:340882/1‑148 (MQ=255) tGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGcaccac < 7:162924/102‑1 (MQ=255) tGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACgag < 1:397730/149‑1 (MQ=255) tGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACga < 3:105187/148‑1 (MQ=255) tGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACga < 1:297531/148‑1 (MQ=255) tGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGAAGACACACACACGAAAAGATGAACCCGGCGAGcaccac > 8:162924/1‑102 (MQ=255) gCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACgaga > 3:138999/1‑149 (MQ=255) cAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACgaga < 7:205197/148‑1 (MQ=255) cAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACgaga < 4:146137/148‑1 (MQ=255) cAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTCCAAGAAGCTTTCCAACTTTGGCAGAAACCCACACGAAAAGATGAACCGGGCGAGCACAACCGCGTTGACGGGTGGCTCATGAGCAACCAATCACCAAGAAAAACGAGAc > 3:84751/1‑149 (MQ=255) aaaaC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAcc > 1:273903/1‑149 (MQ=255) aaaC‑TTTGACGCCCAGGGGGCGCCTGGGCGTCAAAGTTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACgaga < 6:354328/149‑1 (MQ=255) aaC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTc < 4:138999/149‑1 (MQ=255) aaC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTc > 3:133906/1‑149 (MQ=255) caCGCCCAGGCGCCCCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGcc > 6:211125/2‑148 (MQ=255) aCGCCCAGGCGCCCCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGaaaaa < 4:386973/133‑1 (MQ=255) aCGCCCAGGCGCCCCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGaaaaa > 3:386973/1‑133 (MQ=255) aCGCCCAGGCGCCCCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAc > 4:376782/1‑139 (MQ=255) aCGCCCAGGCGCCCCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAc < 3:376782/139‑1 (MQ=255) gCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAAt < 2:401533/149‑1 (MQ=255) cccAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATc > 3:182967/1‑149 (MQ=255) cAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACAGATGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGc > 1:129790/1‑149 (MQ=255) aGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGcc < 3:90780/149‑1 (MQ=255) ggggCGCCTTGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagca > 2:379126/1‑107 (MQ=255) ggggCGCCTTGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagca < 1:379126/107‑1 (MQ=255) ggCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTa > 1:3809/1‑149 (MQ=255) | ATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGC‑TGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAC‑TTTGACGCCCAGGGGGCGCCTGGGCGT‑‑‑GGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTA > NC_002947/4936483‑4936775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |