| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,945,627 | C→G | 5.6% | P318P (CCG→CCC) | flhB ← | flagellin export apparatus substrate specificity protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,945,627 | 0 | C | G | 5.6% | 285.4 / 4.7 | 89 | P318P (CCG→CCC) | flhB | flagellin export apparatus substrate specificity protein |
| Reads supporting (aligned to +/- strand): ref base C (41/43); new base G (3/2); total (44/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
CAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTG > NC_002947/4945483‑4945774 | cAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCgg < 1:369650/147‑1 (MQ=255) gTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGAt > 5:363635/1‑149 (MQ=255) gCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCGGCGCTGGCGCGGGCGAtcta > 7:172273/1‑146 (MQ=255) tGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAg < 7:73616/147‑1 (MQ=255) gggCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGa > 1:310058/1‑149 (MQ=255) ggCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCGGCGCTGGCGCGGGCGAtctatta < 8:172273/146‑7 (MQ=255) ggCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCAGCGCCAGCGTCGGCGATTCGAGGATc > 5:316744/1‑149 (MQ=255) gcccttgccGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGAt < 6:303400/147‑1 (MQ=255) cccttgccGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGAtgtt < 6:321970/149‑1 (MQ=255) cccttgccGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGAtgtt < 1:78571/149‑1 (MQ=255) cttgccGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGAtgttgt < 6:134770/149‑1 (MQ=255) gccGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGc < 7:259813/148‑1 (MQ=255) gccGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCt > 6:133283/1‑149 (MQ=255) gcgGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGc > 2:50920/1‑149 (MQ=255) cgGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGcc < 5:196623/149‑1 (MQ=255) cgGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGcc < 2:30873/149‑1 (MQ=255) ggTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGcc > 4:25078/1‑148 (MQ=255) ttGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAAttt > 6:242248/1‑149 (MQ=255) ttGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAAtt > 4:221345/1‑148 (MQ=255) ttGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAAtt < 5:133283/148‑1 (MQ=255) ggCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCa > 3:9563/1‑149 (MQ=255) gCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCa < 6:2092/148‑1 (MQ=255) aaTCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGa > 2:350912/1‑122 (MQ=255) aaTCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGa < 1:350912/122‑1 (MQ=255) aaTCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGaa > 7:32732/1‑149 (MQ=255) aTCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAAt < 6:363635/149‑1 (MQ=255) ggAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTgg > 2:192297/1‑116 (MQ=255) ggAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTgg < 1:192297/116‑1 (MQ=255) ggAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCtt > 4:136864/1‑148 (MQ=255) gAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCAATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTc > 5:142384/1‑148 (MQ=255) acacATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAAc < 5:218815/149‑1 (MQ=255) acaTACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGc < 3:221345/149‑1 (MQ=255) acaTACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGc > 4:403283/1‑149 (MQ=255) aTACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCCCGCGAATTTCACGGGGCTGCAACGCCa > 2:244228/1‑149 (MQ=255) cc‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGaaa > 5:272726/1‑149 (MQ=255) cACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGGTCATGTTCGGTGGAGTAATAGATAGCCCGCTCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCg < 4:325019/148‑1 (MQ=255) ccTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTa > 2:57976/1‑149 (MQ=255) cTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGGATAACGCCAATTTCACGAATATTCAACGCCATGAAATCGCTAc > 1:134964/1‑149 (MQ=255) cTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTAc < 1:262825/149‑1 (MQ=255) cTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTAc < 1:50920/149‑1 (MQ=255) cTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCCCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTAc > 3:79158/1‑149 (MQ=255) gcgcCACCGCCAGGTACAGCCCCGCCGGGATCCCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTAccc < 4:79158/149‑1 (MQ=255) cgcCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTAccc < 3:403283/148‑1 (MQ=255) ccACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTg < 3:155854/149‑1 (MQ=255) cACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGa < 4:122869/83‑1 (MQ=255) cACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGa > 3:122869/1‑83 (MQ=255) aCCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGc < 8:338329/149‑1 (MQ=255) aCCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGc > 5:352182/1‑149 (MQ=255) ccAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCCATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCcag > 7:158882/1‑148 (MQ=255) cAGCGCCGCCTGGATATGCTGCTCAAGTTCGGTGGAGTAATAGATGGCGCTCGCCTGCGTCGGCGATTCGAGGATATGTATGTTGTGCTCCTCTCCAATTTGACGAATCTTCAACGCCATGAAATGGCTACCCTTTGCGAGCAGCaaa < 6:316744/148‑2 (MQ=255) cAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAAc < 6:168466/148‑1 (MQ=255) ggATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCg > 5:188642/1‑149 (MQ=255) ccTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGACTTtc > 7:207266/1‑149 (MQ=255) cTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCt < 6:352182/145‑1 (MQ=255) cTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGAAGCAACGGCGCCGCACCGCCTTtc > 8:41793/1‑148 (MQ=255) tGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTtctc > 1:55652/1‑149 (MQ=255) cTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACTGCGCCGAACAGCCTTTCTCCg > 5:310065/1‑149 (MQ=255) cTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCg < 2:55652/149‑1 (MQ=255) cTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCg > 6:308237/1‑149 (MQ=255) tCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCgg > 6:50601/1‑149 (MQ=255) cAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCggg > 3:102947/1‑149 (MQ=255) cAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTCGTGCTCCACGCCAATTTCACGAATCTTCAACGCCAt > 6:52127/1‑97 (MQ=255) aaGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGt > 5:393028/1‑149 (MQ=255) aaGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCAATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCggg < 6:142384/148‑1 (MQ=255) gtttgAGTAATAGATCGCCCGCGCCAGCGCCTGAGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGTGTCGTAtt < 6:310065/145‑1 (MQ=255) aGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCaaa < 8:32732/149‑1 (MQ=255) aGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCaaa < 6:393028/149‑1 (MQ=255) gTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCaaa < 5:308237/148‑1 (MQ=255) ctcgaaTCGCCGGCGCTGGCGCGGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCggg < 7:368979/129‑1 (MQ=255) ctcgaaTCGCCGGCGCTGGCGCGGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCggg > 8:368979/6‑134 (MQ=255) aTAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCggg > 8:251098/1‑133 (MQ=255) aTAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCggg < 7:251098/133‑1 (MQ=255) aTAGATCGCCCGCGCCAGCGCCGGCGAATCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTAAACGCCATGAAATCGCTACCCATGGCCAGCAGCAACGGCGCCGCACCGCCt > 3:250768/1‑124 (MQ=255) gATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCg < 1:57976/149‑1 (MQ=255) gATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATATTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGTAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCAcc < 7:79331/148‑1 (MQ=255) aacGCCCGCGCCAGCGCCGGCGATTCGAGGATGTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTa < 4:136252/85‑1 (MQ=255) tCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGAGCTCCACGCCAATTTCACGAATCTTCACCGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTATCTCCGGGTCGTATTTCAAAGACACCgaa > 8:190396/1‑147 (MQ=255) cccGCGCCAGCTCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATaa < 3:65215/149‑1 (MQ=255) ccGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCcagca > 1:183929/1‑95 (MQ=255) ccGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCcagca < 2:183929/95‑1 (MQ=255) ccGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAAATTCACGAATCTTCAACGCCATGAACTCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAAt > 1:97936/1‑149 (MQ=255) cgcgCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGcc < 6:186368/113‑1 (MQ=255) cgcgCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTcc > 7:213354/1‑120 (MQ=255) cgcgCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTcc < 8:213354/120‑1 (MQ=255) gcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGt < 1:244228/149‑1 (MQ=255) ccAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTc > 2:256989/1‑149 (MQ=255) tggcgcGGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCg > 1:279675/3‑149 (MQ=255) aGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCgg < 4:102947/149‑1 (MQ=255) aGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCCTCgg > 5:196087/1‑149 (MQ=255) ccGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTg > 7:19966/1‑149 (MQ=255) ccGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTg > 6:230820/1‑149 (MQ=255) | CAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCC‑AGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTG > NC_002947/4945483‑4945774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |