| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,961,914 | C→T | 5.9% | R175H (CGT→CAT) ‡ | atoC ← | two‑component system DNA‑binding transcriptional activator AtoC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,961,914 | 0 | C | T | 5.9% | 255.6 / 2.5 | 84 | R175H (CGT→CAT) ‡ | atoC | two‑component system DNA‑binding transcriptional activator AtoC |
| Reads supporting (aligned to +/- strand): ref base C (34/45); new base T (3/2); total (37/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAAGGTGCCGCCTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGCCC > NC_002947/4961766‑4962059 | caAGGTGCCGCCTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCAc > 6:66337/1‑149 (MQ=255) tGCCGCCTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACgcggc < 3:329167/149‑1 (MQ=255) ccgccTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGa > 4:103622/1‑149 (MQ=255) ccgccTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGa < 1:44886/149‑1 (MQ=255) gccTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGAct > 2:191258/1‑149 (MQ=255) cTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGActgc > 2:293389/1‑149 (MQ=255) ttCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGActgct > 7:177043/1‑149 (MQ=255) accttgcTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGActgct < 7:170009/143‑1 (MQ=255) cGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGActgct < 6:8610/147‑1 (MQ=255) ccTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGa < 8:283087/149‑1 (MQ=255) cTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGaa < 5:221946/149‑1 (MQ=255) cTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAAt < 8:277138/147‑1 (MQ=255) tCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATg > 7:24668/1‑147 (MQ=255) gAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAg < 3:103622/148‑1 (MQ=255) aaCTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAgcg > 6:152161/1‑149 (MQ=255) aCTTGCCAGCCTGAGCCGCGTTTGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAgcgc < 2:123562/149‑1 (MQ=255) ttGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGaa < 4:102587/139‑1 (MQ=255) ttGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGAAGTTGATCGCCACGAAGGGCTGCGCCGCCCGCGGCGACTGCTGGTGaa > 3:102587/1‑139 (MQ=255) cAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCGTgcggcgcagccc < 7:162656/129‑7 (MQ=255) cAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCGTgcggcgcagccc > 8:162656/1‑123 (MQ=255) cAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACTCGGCGACTGCTGGTGAATGTAGCGCGCCAGc < 4:108828/149‑1 (MQ=255) cAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAg > 5:277514/1‑148 (MQ=255) ccTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGActgctg < 8:178932/127‑1 (MQ=255) ccTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGActgctg > 7:178932/1‑127 (MQ=255) aGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTcc < 6:81088/148‑1 (MQ=255) gCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCtt < 3:352865/149‑1 (MQ=255) gCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCtt < 3:94809/149‑1 (MQ=255) gCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCtt < 8:332056/149‑1 (MQ=255) ccGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCtt < 8:177043/148‑1 (MQ=255) ggATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCa < 8:354296/148‑1 (MQ=255) gcgcCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTAcc < 7:220117/149‑1 (MQ=255) cgcCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCg > 4:100935/1‑149 (MQ=255) ccGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGa < 6:108087/149‑1 (MQ=255) gTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑Tc > 7:110129/1‑149 (MQ=255) ggCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCCCGCGGCGCCTGCTGGAGAATGTAGCGCGCCAGCCCTTCCTTGCCAGTACCGGAC‑‑TCGCCg > 4:232230/1‑148 (MQ=255) gcgcCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCgg > 7:158097/1‑148 (MQ=255) gcCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGaaa < 6:222806/149‑1 (MQ=255) gTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTa < 8:110129/146‑1 (MQ=255) gTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACgg > 1:390049/1‑149 (MQ=255) gCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTc < 4:16068/148‑1 (MQ=255) gCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTc < 1:191258/148‑1 (MQ=255) cGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCg < 3:290230/131‑1 (MQ=255) cGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCg > 4:290230/1‑131 (MQ=255) cGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAg > 2:185807/1‑149 (MQ=255) cGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAg > 4:154917/1‑149 (MQ=255) gAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCGTgcggcgcag < 5:264548/80‑4 (MQ=255) gAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCGTgcggcgcag > 6:264548/1‑77 (MQ=255) aCAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTc < 8:158097/148‑1 (MQ=255) ggTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTgc > 2:268885/1‑149 (MQ=255) tGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTgcgc > 8:78648/1‑149 (MQ=255) tGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTgcgc < 1:185807/149‑1 (MQ=255) gCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTgcgcgc < 5:152161/149‑1 (MQ=255) ccTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGcc < 5:66337/149‑1 (MQ=255) tgttgtCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGg‑cc < 8:24668/149‑1 (MQ=255) tCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCa < 1:268885/148‑1 (MQ=255) tCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAg > 5:54713/1‑149 (MQ=255) tCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAg > 5:194681/1‑149 (MQ=255) ccaTCGCCGCGCAGTTGATCGCCAAGAAGGCATGCCCCGCACCCGGCCACTGCTGCTGAATGTAACGCGCCAGCACTTCCTTGCCACTACCGTAC‑‑TCGCCGGAAAACAGTACGGACGAGTCACTGCCCGACCCACGGG‑CCGCCAGcac > 2:157412/3‑146 (MQ=255) ccgcGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAAc > 1:148912/1‑149 (MQ=255) ccgcGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAAc > 5:401764/1‑149 (MQ=255) cgcgCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACt > 7:157370/1‑149 (MQ=255) aGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGa < 6:54713/149‑1 (MQ=255) ttGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTc < 2:391456/134‑1 (MQ=255) ttGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTc > 1:391456/1‑134 (MQ=255) gATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTgg > 5:362264/1‑149 (MQ=255) gATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTgg > 8:253917/1‑149 (MQ=255) gCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCgg < 6:401764/149‑1 (MQ=255) gCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCgg < 6:277514/149‑1 (MQ=255) ccACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGc > 4:51680/1‑149 (MQ=255) cGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCg > 1:71434/1‑149 (MQ=255) aaGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCa < 7:253917/149‑1 (MQ=255) aGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAg < 2:71434/149‑1 (MQ=255) ggCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACggg > 5:243222/1‑109 (MQ=255) ggCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACggg < 6:243222/109‑1 (MQ=255) gtcgccgcGTGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCAc > 3:307985/3‑149 (MQ=255) gccgcACGCGGCGAGTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCgg < 1:157412/149‑1 (MQ=255) gccgcACGCGGCGACTGCTGGAGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCgg > 2:325632/1‑149 (MQ=255) cgcACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGACAGACGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCgg > 1:116239/1‑149 (MQ=255) cgcACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGcc < 6:362264/149‑1 (MQ=255) gcACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGg‑cc > 3:93272/1‑102 (MQ=255) gcACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGg‑cc < 4:93272/102‑1 (MQ=255) gcACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGccc < 2:148912/149‑1 (MQ=255) gcACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGccc < 7:38624/149‑1 (MQ=255) gcACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGccc < 6:118755/149‑1 (MQ=255) cACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGGCCCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGccc < 1:293389/149‑1 (MQ=255) | CAAGGTGCCGCCTTCGGCCTGCTCGAACTTGCCAGCCTGAGCCGCGATAGCGCCGGTGAAGGCGCCCTTCTCGTGGCCGAACAGGGTGGCCTCGAGCATGTTGTCGGGGATCGCCGCGCAGTTGATCGCCACGAAGGGCTGCGCCGCACGCGGCGACTGCTGGTGAATGTAGCGCGCCAGCACTTCCTTGCCAGTACCGGAC‑‑TCGCCGGAAATCAGTACGGTCGAGTCACTGCGCGCCACACGGG‑CCGCCAGCTCCAGCAACTGGCGACTGGCCGGCTCGCAGGCCACCGGCCC > NC_002947/4961766‑4962059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |