| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,967,646 | A→C | 7.2% | S11A (TCC→GCC) | fliD ← | flagellar filament capping protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,967,646 | 0 | A | C | 7.2% | 261.5 / 8.3 | 83 | S11A (TCC→GCC) | fliD | flagellar filament capping protein |
| Reads supporting (aligned to +/- strand): ref base A (38/39); new base C (3/3); total (41/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
GGAAGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAACCATCA > NC_002947/4967502‑4967790 | ggAAGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCg < 3:331681/149‑1 (MQ=255) gAAGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGGCTCCGGCGTCGa > 6:172067/1‑149 (MQ=255) gTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTCGGTATCGGCTCCGGCGTCGATAcc < 1:221291/149‑1 (MQ=255) tCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGGCTCCGGCGTCGATAccca < 5:172067/148‑3 (MQ=255) tCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCac < 6:392281/148‑1 (MQ=255) cAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCactga > 7:231338/1‑149 (MQ=255) cAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCactga < 3:36661/149‑1 (MQ=255) cAATGCATTCTTAAGCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCactga > 7:346386/1‑149 (MQ=255) aTGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCactgact > 3:121075/1‑149 (MQ=255) tGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCactgactg < 3:25639/149‑1 (MQ=255) tGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCact > 4:25691/1‑144 (MQ=255) tGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCact < 3:25691/144‑1 (MQ=255) cATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGCTACCACTGACtg‑tt < 7:347639/149‑1 (MQ=255) cATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACtg‑tt < 4:121075/149‑1 (MQ=255) cATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACtg‑tt < 3:21946/149‑1 (MQ=255) ttCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACtg‑ttg > 2:39247/1‑148 (MQ=255) ttAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGCTACCAATCACTG‑TTGTACt > 6:104413/1‑149 (MQ=255) ttAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACt > 5:338085/1‑149 (MQ=255) aaTCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTg > 7:190003/1‑149 (MQ=255) acaGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCttt < 8:346386/149‑1 (MQ=255) gcagACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTtata < 6:338085/149‑1 (MQ=255) gACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATcc > 4:5361/1‑149 (MQ=255) gACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATcc < 2:200017/149‑1 (MQ=255) gACACTTGTGTGGTCGTAGTCTTCTGATGAGTAGTGATCTGCTGTTGCTTGGGCTCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATcc < 5:403792/149‑1 (MQ=255) acTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCt > 8:153889/1‑148 (MQ=255) ttGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGcc > 8:140093/1‑130 (MQ=255) ttGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGcc < 7:140093/130‑1 (MQ=255) gtgGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCTACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGc > 8:12000/1‑149 (MQ=255) tgGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGc > 8:80256/1‑148 (MQ=255) tgGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGc > 4:171197/1‑148 (MQ=255) gTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCC‑TTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGaa < 4:161335/148‑1 (MQ=255) tCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTg < 1:97111/120‑1 (MQ=255) tCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTg > 2:97111/1‑120 (MQ=255) tGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCtt > 1:407662/1‑149 (MQ=255) ttGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGTCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGACATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGa > 1:337009/1‑149 (MQ=255) ttGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGa < 2:349415/149‑1 (MQ=255) gAGTAGTGATCTGCTGTTGCTTGGGGGCCTTTTGGGCATTGGCCAGAGCCTTGACAATTGACTGGGTATCGTCGCCGGAGCCGATACCACAGACTG‑TTGTACTTGCCATTGCTTTATTTCGCTGATCAGCGAATGCCAATTGCTTGAc < 2:154973/148‑1 (MQ=255) gAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGAc < 8:190003/148‑1 (MQ=255) tagtGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGat > 2:170021/1‑148 (MQ=255) agtGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGAt < 7:246184/122‑1 (MQ=255) agtGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGAt > 8:246184/1‑122 (MQ=255) tGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAAt < 7:149151/134‑1 (MQ=255) tGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAAt > 8:149151/1‑134 (MQ=255) aTCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCt < 6:363616/105‑1 (MQ=255) aTCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCt > 5:363616/1‑105 (MQ=255) gctgTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCg < 3:5361/148‑1 (MQ=255) ctgTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGc > 6:219117/1‑146 (MQ=255) ctgTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCga < 1:170021/148‑1 (MQ=255) tgTTGCTTGGTCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTTGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCgaga < 7:251474/149‑1 (MQ=255) tgTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCgaga > 3:282197/1‑149 (MQ=255) gggCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATc < 4:282197/148‑1 (MQ=255) ggCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATcc < 8:231338/148‑1 (MQ=255) ccTTTTTGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTc < 6:32683/149‑1 (MQ=255) ttttCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGatgaat < 5:227967/126‑1 (MQ=255) ttttCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGatgaat > 6:227967/1‑126 (MQ=255) cATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCAt > 4:348514/1‑149 (MQ=255) cATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCAt < 3:348514/149‑1 (MQ=255) cATCGGCCAGAGCCTTCACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCa > 1:115578/1‑149 (MQ=255) aTCGGTCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATg < 2:337009/149‑1 (MQ=255) aTCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGAGACCACTGACTG‑TTGTACTTTCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCAGAGACAATACTAATg > 7:134339/1‑149 (MQ=255) aTCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCAGGAGCCGATACCAATGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATg > 1:305530/1‑149 (MQ=255) ccTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTaca < 7:80256/149‑1 (MQ=255) ccTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTaca < 1:39247/149‑1 (MQ=255) cTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCgag > 3:110574/1‑113 (MQ=255) cTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCgag < 4:110574/113‑1 (MQ=255) ttGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCATGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCAAACATTacac > 2:386645/1‑148 (MQ=255) gACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTAcaca < 2:344227/147‑1 (MQ=255) aCAATCGACTGGGTATCGACGCCGGATCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACAtt < 5:104413/148‑1 (MQ=255) aaTCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGt > 5:368324/1‑148 (MQ=255) gACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCAGAGTCAAGACTCATGCCAACATTACTCATTGtcatc > 4:64849/1‑148 (MQ=255) cagtggTATCGGCTCCGGCGTCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGtcatc > 8:85579/5‑147 (MQ=255) aCTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGtcatc > 1:274354/1‑147 (MQ=255) agtggTATCGGCTCCGGCGTCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCaa < 7:85579/145‑1 (MQ=255) tggTATCGGCTCCGGCGTCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGt > 4:371884/2‑148 (MQ=255) gggTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGt > 6:393553/1‑148 (MQ=255) ggTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTa > 6:191955/1‑148 (MQ=255) gTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTaa > 3:123817/1‑148 (MQ=255) tCGACGCCGGAGCCGATACCACTGACTG‑TTGTACCTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTaaaaaa > 8:82647/1‑149 (MQ=255) gACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAAc > 2:296184/1‑148 (MQ=255) aCGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAACCa < 3:171197/149‑1 (MQ=255) cgacGGAGACGATACCACTGACTG‑TTTTACTTTCCATTGCTTTATATCCCTGATCATCGAATTCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAATTAAAAAACCAt < 3:394410/146‑1 (MQ=255) cGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAACCAt < 1:296184/149‑1 (MQ=255) ccGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAACCATCa < 2:407662/149‑1 (MQ=255) | GGAAGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTG‑TTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAACCATCA > NC_002947/4967502‑4967790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |