Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,256,864 T→A 8.2% intergenic (+16/+29) PP_5703 → / ← PP_4634 type III effector protein HopJ/alpha/beta family hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,256,8640TA 8.2% 144.5 / 3.5 57intergenic (+16/+29)PP_5703/PP_4634type III effector protein HopJ/alpha/beta family hydrolase
Reads supporting (aligned to +/- strand):  ref base T (24/27);  new base A (2/3);  total (27/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.65e-01

GCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAATT  >  NC_002947/5256717‑5257010
                                                                                                                                                   |                                                                                                                                                    
gCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTACCGACCATGGCAACATCCGTGAACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCtt                                                                                                                                                     >  5:142209/1‑149 (MQ=255)
gCCTTCGGCGAGAACTACCGTGATGTGTTGGCCACGACTGAGGGTAGCGACCATGGCAACATCCGTGCACTGTTCAAACACGGTCTGGCGGGCGTGAAGTTTGATGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGACGGGGCCGCtt                                                                                                                                                     >  7:334570/1‑149 (MQ=255)
 ccTTCGGCGATCACTTCCGTGATGTGTTGTCCACGCCTGAGGTTAGCGACCATGGCAACATCCGTGCACTGTTCAAACAGGGTCTGGCGGGCGTTAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCttt                                                                                                                                                    <  8:334570/149‑1 (MQ=255)
          aGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCa                                                                                                                                           <  4:188940/149‑1 (MQ=255)
          aGCACTACCGTGATGTGTTGGCCACGCCGGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCAAAGCGGccccg                                                                                                                                           <  2:315022/149‑2 (MQ=255)
            cACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCAAAGCGGccccggc                                                                                                                                         <  4:98168/149‑4 (MQ=255)
              cTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCATTGCGGCCCCCCGa                                                                                                                                        >  4:196302/1‑148 (MQ=255)
               tACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATc                                                                                                                                      >  1:3130/1‑149 (MQ=255)
                         tgtTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCAc                                                                                                                            >  7:88474/1‑149 (MQ=255)
                             ggCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCt                                                                                                                         <  8:88474/148‑1 (MQ=255)
                                cACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAAt                                                                                                                     >  8:282768/1‑149 (MQ=255)
                                cACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAAt                                                                                                                     >  6:2298/1‑149 (MQ=255)
                                cACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAAt                                                                                                                     >  2:157783/1‑149 (MQ=255)
                                 aCGCCTGAGGGTAGCGACCGTGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATc                                                                                                                    <  7:103553/149‑1 (MQ=255)
                                    ccTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCat                                                                                                                 <  3:197493/149‑1 (MQ=255)
                                     cTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCat                                                                                                                 >  1:117105/1‑148 (MQ=255)
                                        aGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGCGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCatgatg                                                                                                             <  6:87042/149‑1 (MQ=255)
                                          ggTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGc                                                                                                                                               >  7:216698/1‑113 (MQ=255)
                                          ggTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGc                                                                                                                                               <  8:216698/113‑1 (MQ=255)
                                          ggTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGt                                                                                                           <  2:3130/149‑1 (MQ=255)
                                          ggTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGt                                                                                                           <  7:311466/149‑1 (MQ=255)
                                               cGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAg                                                                                                      >  7:38272/1‑149 (MQ=255)
                                                          aCATCCTTGCACTGATCAAACAGGGTGTGGCGGGCGGGAAGTTTGCTGCGCAGCCGCTTGCGGGCAAGGGTTGTGATTGCGGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCt                                                                                           <  3:196302/149‑1 (MQ=255)
                                                               cGTGCACTGACCAAACACGGTCTGGCGGGCTGGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑Tcc                                                                                      <  6:285059/147‑1 (MQ=255)
                                                                 tGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGcc                                                                                  <  1:232805/149‑1 (MQ=255)
                                                                   cACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTc                                                                                <  2:117105/149‑1 (MQ=255)
                                                                    aCTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGc                                                                                   <  4:366934/145‑1 (MQ=255)
                                                                    aCTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGc                                                                                   >  3:366934/1‑145 (MQ=255)
                                                                    aCTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTcc                                                                               >  2:104586/1‑149 (MQ=255)
                                                                         tCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGc                                                                          >  1:16925/1‑149 (MQ=255)
                                                                            aaCACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATc                                                                                                                                      <  1:302719/88‑1 (MQ=255)
                                                                            aaCACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCCCGTTTCGGCCCCACGaaa                                                                                                                                      >  2:302719/1‑86 (MQ=255)
                                                                                       gcgggcgTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGc                                                              >  4:237345/1‑147 (MQ=255)
                                                                                              tGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTTCCGCCCCACGAAACTGCCCCCACCCAGAAACCAATATAGTTCCCAGACCCCCCCCT‑‑ACCAGCCACCCCACACCCAACCACAGCAAAGGCAcc                                                     >  8:22035/1‑149 (MQ=255)
                                                                                                  gTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGcc                                                 >  1:150894/1‑149 (MQ=255)
                                                                                                   tttGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCca                                                >  7:184210/1‑149 (MQ=255)
                                                                                                       ctgcGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAgg                                            <  7:282768/149‑1 (MQ=255)
                                                                                                           gcAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCCCCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCACCCCCTGCAAGGCCCCCGGCCACCGCCttt                                        >  5:371758/1‑149 (MQ=255)
                                                                                                            cAGCCGCGTGCGCGCATGGCTTGAGATGGCCGGGGCCGCTTGGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTc                                       <  6:276225/149‑1 (MQ=255)
                                                                                                              gCCGCTGGCGCCAATGGCTTGAGCTGGCGGGGGCCGCTTGGCGCCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTcgc                                     <  1:205623/149‑1 (MQ=255)
                                                                                                               ccGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGCTCCTGCGCCCCCCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCCCCGGCCACAGGCTTTcgc                                     >  7:83640/1‑148 (MQ=255)
                                                                                                               ccGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCCGGCCCCCCGCCT‑‑TCCAGCCAACCCAGCCGCAACCACTGCAACGCCCCCCGCCACAAGCATTcgc                                     >  8:229381/1‑148 (MQ=255)
                                                                                                                 gCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGa                                   >  7:161978/1‑148 (MQ=255)
                                                                                                                     gcgcgcAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAAc                                <  8:161978/147‑1 (MQ=255)
                                                                                                                         gcAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCAGCCCCCACCCACAAACCAAGATGGTGCCACGCCCCCCGCCT‑‑TCCAGCCACCCCATCCGCAACCACTGCAAAGCCACCGGCCACAGGCATTCGCGAAACCCGTc                           >  2:325325/1‑148 (MQ=255)
                                                                                                                           aaGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATg                        <  7:229381/149‑1 (MQ=255)
                                                                                                                             ggCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTCCTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATg                        <  1:325325/149‑1 (MQ=255)
                                                                                                                             ggCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGa                      <  1:104586/149‑1 (MQ=255)
                                                                                                                                ttGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGaaa                    >  6:376104/1‑148 (MQ=255)
                                                                                                                                  gagaTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGaaaaa                  <  5:2298/148‑1 (MQ=255)
                                                                                                                                     aTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCAc                                                                 <  7:87668/98‑1 (MQ=255)
                                                                                                                                     aTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCAc                                                                 >  8:87668/1‑98 (MQ=255)
                                                                                                                                         ccGGGGCCGCTTTGCGGCCCCACGATCCTGCGCGCACCCTCAATCGATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGATACCGGTCATGGAAAAACGCGAAAt          <  7:22035/149‑1 (MQ=255)
                                                                                                                                          tggggCCGCAAAGCGGCCCCGCGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCgg                             >  6:375966/2‑129 (MQ=255)
                                                                                                                                          tggggCCGCAAAGCGGCCCCGCGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCgg                             <  5:375966/128‑1 (MQ=255)
                                                                                                                                          cGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATg         <  2:16925/149‑1 (MQ=255)
                                                                                                                                             ggCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGcc      <  3:237345/149‑1 (MQ=255)
                                                                                                                                              gCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCg                              <  6:51270/124‑1 (MQ=255)
                                                                                                                                              gCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCg                              >  5:51270/1‑124 (MQ=255)
                                                                                                                                                 gCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCTCCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAAtt  >  1:332384/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCT‑‑TCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAATT  >  NC_002947/5256717‑5257010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: