| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,276,840 | G→A | 7.4% | intergenic (‑144/‑200) | cioA ← / → PP_4652 | cyanide insensitive ubiquinol oxidase subunit I/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,276,840 | 0 | G | A | 7.4% | 276.6 / 7.2 | 94 | intergenic (‑144/‑200) | cioA/PP_4652 | cyanide insensitive ubiquinol oxidase subunit I/membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (31/55); new base A (3/4); total (35/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.72e-01 | |||||||||||
ACATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGTTACA > NC_002947/5276693‑5276987 | aCATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCACACAGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGa > 6:164705/1‑149 (MQ=255) cATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGAt < 4:261470/149‑1 (MQ=255) aTGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGAtt < 6:264359/149‑1 (MQ=255) ggTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGa > 2:217286/1‑149 (MQ=255) ggTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGa > 8:154711/1‑149 (MQ=255) tGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGGAGTAGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATATGGAACGATTGAc > 1:325582/1‑149 (MQ=255) tGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGAcc < 2:68176/149‑1 (MQ=255) tGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGAcc < 3:106717/149‑1 (MQ=255) cTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGGTGATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGAccc < 1:84202/149‑1 (MQ=255) cTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGAccc < 4:165307/148‑1 (MQ=255) tctTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATc > 3:16932/1‑148 (MQ=255) tctTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATc > 6:97435/1‑148 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCaatg > 8:326309/1‑148 (MQ=255) cAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCaat < 3:267517/147‑1 (MQ=255) gATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGGTCAATCGTTCCAGATCaatgaat < 7:249087/149‑1 (MQ=39) gATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCaatgaat > 1:352507/1‑149 (MQ=255) gATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCaatgaat > 6:175268/1‑149 (MQ=255) tAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGc < 2:22873/149‑1 (MQ=255) aaTCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGTAACGATTGACCCAGATCAATGAATGCt < 4:224924/149‑1 (MQ=255) aaTCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCt < 5:393789/149‑1 (MQ=255) cGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTTCGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGc < 5:331542/149‑1 (MQ=255) gTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCa < 2:267771/149‑1 (MQ=255) ttGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTccc > 3:56726/1‑148 (MQ=255) gtggaaccAGTCGCCCACTGACCCCACTGG‑GTCGAGTACGGCGTGTTGGAAATGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACTATTGACCCACATCAATGAATGCTAGGAAGCATAGTCCCGaa > 3:246251/7‑149 (MQ=255) gCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATg < 6:151965/148‑1 (MQ=255) cccAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGcc > 3:316694/1‑149 (MQ=255) cccAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGcc > 7:100587/1‑149 (MQ=255) cccAGGCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGcc < 6:110180/149‑1 (MQ=255) cAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCg < 5:97435/149‑1 (MQ=255) aGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCgg > 2:3722/1‑149 (MQ=255) gTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGt < 1:217286/149‑1 (MQ=255) tCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTg < 7:159127/149‑1 (MQ=255) cACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGCCGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCg < 5:265548/149‑1 (MQ=255) cTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCgtg < 8:317601/149‑1 (MQ=255) tGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCgtgt < 3:71184/149‑1 (MQ=255) cccccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtgg < 6:312890/149‑1 (MQ=255) cccccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAAG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtgg > 8:84533/1‑149 (MQ=255) ccccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtggt < 5:177829/149‑1 (MQ=255) cccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCGGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtggtg > 5:81935/1‑149 (MQ=255) cccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtggtg < 4:289234/149‑1 (MQ=255) cccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtggtg < 4:196011/149‑1 (MQ=255) cccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtggtg < 2:325582/149‑1 (MQ=255) ccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTgtggtg > 8:306214/1‑148 (MQ=255) ccACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGtggtgg < 3:398738/149‑1 (MQ=255) g‑gTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGcc < 2:352507/149‑1 (MQ=255) g‑gTCGAGTACGGCGTGTTGGAATTGTGCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGcc < 7:154711/149‑1 (MQ=255) tCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCcgc < 4:316694/149‑1 (MQ=255) tCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCcgc > 7:331858/1‑149 (MQ=255) gattACGGCGTGTTGGAATTGTTCTGTTCGATCTCAGG‑GTTTACGGCCAGACGGCGAATTCATTGATCTGGAACGATTGACCCATATCAATGAATGCTAGGAAGCATAGTCCCGAATGGGCCGGTGGGCCGTGTGGTTTATTGCCTCGt < 4:246251/146‑1 (MQ=255) tACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGAc < 7:306214/149‑1 (MQ=255) cGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGAcc < 4:56726/148‑1 (MQ=255) gCGTGTTGGAATTGATCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCGCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGt < 4:112741/149‑1 (MQ=255) gCGTGTTGGAATTGATCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGt > 3:112741/1‑149 (MQ=255) cGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCGGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGtt < 6:81935/149‑1 (MQ=255) gAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCa < 8:100587/148‑1 (MQ=255) gAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCa < 4:387176/148‑1 (MQ=255) aTTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCAGAAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCAccc > 1:333978/1‑149 (MQ=255) gttctgttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCctct > 8:180702/1‑149 (MQ=255) ttctgttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCctct < 4:16932/148‑1 (MQ=255) ttctgttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCtt > 4:111988/1‑149 (MQ=255) ctgttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCttt > 6:28851/1‑148 (MQ=255) ctgttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCttt < 5:246156/148‑1 (MQ=255) ctgttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCttt < 5:175268/148‑1 (MQ=255) gttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGa < 8:331858/148‑1 (MQ=255) ttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATTAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGAt < 5:164705/148‑1 (MQ=255) ttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGAt < 3:111988/148‑1 (MQ=255) ttcGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGAt > 8:233231/1‑148 (MQ=255) gCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTg > 4:57602/1‑149 (MQ=255) cAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTg > 4:126533/1‑148 (MQ=255) g‑gATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGaaa < 7:326309/149‑1 (MQ=255) tCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTg > 7:361453/1‑149 (MQ=255) cGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTa < 7:73495/133‑1 (MQ=255) cGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTa > 8:73495/1‑133 (MQ=255) aCGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGa < 3:126533/149‑1 (MQ=255) aCGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGa < 1:3722/149‑1 (MQ=255) cAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCaaa < 7:233231/149‑1 (MQ=255) caTTCATTGATCTGGGTCAATCGTTCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGaaaa < 6:132063/130‑1 (MQ=38) caTTCATTGATCTGGGTCAATCGTTCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGaaaa > 5:126279/2‑131 (MQ=38) caTTCATTGATCTGGGTCAATCGTTCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGaaaa > 5:132063/2‑131 (MQ=38) caTTCATTGATCTGGGTCAATCGTTCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGaaaa < 6:126279/130‑1 (MQ=38) aaTTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGt > 5:381341/1‑93 (MQ=255) aaTTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGt < 6:381341/93‑1 (MQ=255) aTTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACa < 7:180702/149‑1 (MQ=255) aTTGATCTGGGTCAATCGTTCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTg < 5:182885/137‑1 (MQ=39) aTTGATCTGGGTCAATCGTTCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTg > 6:182885/1‑137 (MQ=39) aTTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGAc > 4:127886/1‑91 (MQ=255) aTTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGAc < 3:127886/91‑1 (MQ=255) tCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTg < 2:313286/116‑1 (MQ=255) tCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTg > 1:313286/1‑116 (MQ=255) ggAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGa < 5:378447/125‑1 (MQ=255) ggAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGa > 6:378447/1‑125 (MQ=255) gAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCtt < 2:333978/146‑1 (MQ=255) gAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCtt < 8:361453/146‑1 (MQ=255) gAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTg < 7:84533/147‑1 (MQ=255) gATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGTTACa > 5:374085/1‑148 (MQ=255) | ACATGGTGCTTCCTCTTCAGATAATCCGGCGTCCGGGCTTGTGGCCCCAGTCGCCCACTGCCCCCACTGG‑GTCGAGTACGGCGTGTTGGAATTGTTCTGTTCGATCGCAGG‑GATTCCGGCCAGACGGCCAATTCATTGATCTGGAACGATTGACCCAGATCAATGAATGCTAGGAAGCATAGTCCCGAATGGCCCGGTGGGCCGTGTGGTGGATTGCCGCGTGACCTGTTGCCTCACCCTCTTTGATTAGCAGTGGAAAAGTGCCGACCTGAGCAAACAGTAACCGCTTGTTACA > NC_002947/5276693‑5276987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |