Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,383,313 | A→C | 12.0% | intergenic (‑33/‑224) | pdhR ← / → lldP | DNA‑binding transcriptional regulator LldR/L‑lactate permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,383,313 | 0 | A | C | 12.0% | 132.1 / 10.6 | 50 | intergenic (‑33/‑224) | pdhR/lldP | DNA‑binding transcriptional regulator LldR/L‑lactate permease |
Reads supporting (aligned to +/- strand): ref base A (20/24); new base C (2/4); total (22/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 |
GCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGACACACCCACGGCAGCGCTTTTAAC > NC_002947/5383167‑5383455 | gcgcTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAgg > 4:202761/1‑149 (MQ=255) tCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCTGAAATTTGCCGGGGGt > 3:270915/1‑149 (MQ=255) ggccggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCTGAAATTTGCCGGGGGt < 2:390101/147‑1 (MQ=255) ggccggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGt < 8:312572/147‑1 (MQ=255) gccggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACCATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAACCCATCACATGCTCTCCACACACCCCCGGCAATTTTCAGGGGGTGcg > 4:221233/1‑148 (MQ=255) ccggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCTGAAATTTGCCGGGGGtttgt < 6:84749/149‑5 (MQ=255) cggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCTGAAATTTGCCGGGGGtttgtg < 4:270915/149‑6 (MQ=255) cggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGAACAAAAACCATCACATGCTCTCCACAAACCCCCTGAAATTTGCCGGGGGtttgtg < 8:290364/149‑6 (MQ=255) ggcAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTAt > 2:118834/1‑149 (MQ=255) gCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGcc < 6:219813/149‑1 (MQ=255) cTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCg < 1:118834/149‑1 (MQ=255) cGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAg < 4:38720/149‑1 (MQ=255) gAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAgg > 8:150336/1‑149 (MQ=255) ccTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAaca < 6:162259/148‑1 (MQ=255) ccTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAaca < 6:182132/148‑1 (MQ=255) cTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACAcc > 1:326267/1‑149 (MQ=255) cTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACAcc < 7:231633/149‑1 (MQ=255) ccAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCa < 1:236588/148‑1 (MQ=255) atcCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCcgc < 5:82345/149‑1 (MQ=255) atcCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCcgc > 1:2087/1‑149 (MQ=255) tcCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCcgc > 1:3049/1‑148 (MQ=255) ccAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTc > 5:26231/1‑149 (MQ=255) cAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTcc < 5:327794/149‑1 (MQ=255) gCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCa < 3:148968/149‑1 (MQ=255) gATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCaa < 4:221473/131‑1 (MQ=255) gATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCaa > 3:221473/1‑131 (MQ=255) tCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGcc < 6:5729/102‑1 (MQ=255) tCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGcc > 5:5729/1‑102 (MQ=255) gACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACAt > 3:22065/1‑148 (MQ=255) aCAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCa < 2:3049/149‑1 (MQ=255) aCAATGTCGTCGGACAGGCGCCGGTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCa < 4:22065/149‑1 (MQ=255) gtcgGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAATTTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACCCCCATCAAGCCGCGATTTACCCAGCACATCAGATGCCCg > 5:267396/1‑149 (MQ=255) tcgGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGAt > 8:380322/1‑125 (MQ=255) tcgGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGAt < 7:380322/125‑1 (MQ=255) ggACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCt > 5:298577/1‑148 (MQ=255) cGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGCTCCAGGCCACGCACACACCCAGCAAGCCGCGATTTTCCCAGCCCTTCAGATGCCGGCTCATCGGTCcgc > 2:349701/1‑149 (MQ=255) ttGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGa < 7:150336/149‑1 (MQ=255) ttGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGa < 6:26231/149‑1 (MQ=255) gTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCaaa < 5:226678/149‑1 (MQ=255) tACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAg < 3:202761/149‑1 (MQ=255) tCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGca > 6:24107/1‑149 (MQ=255) cAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATc > 6:162581/1‑111 (MQ=255) cAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATc < 5:162581/111‑1 (MQ=255) aTGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGa > 8:41424/1‑148 (MQ=255) caAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGACACACCCACgg > 3:366153/1‑149 (MQ=255) aCCCCCTGAAATTTGCCGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTAATCGGTACGCGCCAAAAGTTTTGCACAGGAAAAATTGACACACCCACGGCAg > 4:64467/1‑149 (MQ=255) cGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGACACACCCACGGCAGCGCtt < 2:2087/149‑1 (MQ=255) ggCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGACACACCCACGGCAGCGCttt > 6:40374/1‑149 (MQ=255) gCAAATTTCAGTGTGTGCCTATTCTCGCCGATCCAGGCCAAGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGACACACCCACGGCAGCGCtttt < 2:326267/149‑1 (MQ=255) aaTTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGACACACCCACGGCAGCGCTTTTAAc < 5:40374/149‑1 (MQ=255) | GCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACCATCACATGCTCTCCACAAACCCCCGGCAAATTTCAGGGGGTGCCTATTCTCGCCGATCCAGGCCACGCAAACACCCATCAAGCCGCGATTTTCCCAGCACATCAGATGCCCGCTCATCGGTACGCGACCAAAGTTTTGCACAGGACAAATTGACACACCCACGGCAGCGCTTTTAAC > NC_002947/5383167‑5383455 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |