| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,420,022 | A→C | 5.7% | intergenic (+6/+66) | PP_4759 → / ← PP_4760 | transcriptional regulator, GntR family/alcohol dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,420,022 | 0 | A | C | 5.7% | 387.5 / 8.9 | 120 | intergenic (+6/+66) | PP_4759/PP_4760 | transcriptional regulator, GntR family/alcohol dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (54/59); new base C (4/3); total (58/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 121 total aligned reads displayed.
CAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAGTTCGAAA > NC_002947/5419875‑5420169 | aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAgg < 5:281379/149‑1 (MQ=255) aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAgg < 3:365156/149‑1 (MQ=255) aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAgg < 1:246786/149‑1 (MQ=255) aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAgg < 1:252602/149‑1 (MQ=255) aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAgg < 3:123390/149‑1 (MQ=255) ggCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAgtg > 3:93338/1‑149 (MQ=255) ggCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAgtg > 6:214688/1‑149 (MQ=255) gcgGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCTGACAGTCAGTCCGGCAgtagcc > 5:157325/1‑145 (MQ=255) cgGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGACGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAg < 8:3452/149‑1 (MQ=255) gCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGAc < 6:140819/149‑1 (MQ=255) gCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGAc > 2:56313/1‑149 (MQ=255) gCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGAc < 5:214688/149‑1 (MQ=255) aaGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑a < 4:216294/149‑1 (MQ=255) aaGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑a < 2:295611/149‑1 (MQ=255) aGCGTACCTGGGAAACCTGGAGCATGAGGAGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑a < 8:277285/148‑1 (MQ=255) aGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑AGGATGCCGCGCGGGCGGCAGTGTGACTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGAcca > 7:277285/1‑146 (MQ=255) gCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGt < 4:93338/149‑1 (MQ=255) aCCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTatat > 3:50290/1‑149 (MQ=255) ccTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATAtt < 6:325557/149‑1 (MQ=255) gtGGCCAAGCTGGAGCATGAGGCGATGCTCAATGCCATCCGCCGACAAGACA‑GGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTg < 5:129937/148‑1 (MQ=255) cTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTg < 8:211216/149‑1 (MQ=255) cTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTg < 3:219570/149‑1 (MQ=255) tGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTgg > 6:144291/1‑149 (MQ=255) ggCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCGCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTgg > 1:304628/1‑149 (MQ=255) gCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTgg < 2:236288/147‑1 (MQ=255) gCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGc < 4:292229/148‑1 (MQ=255) gCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGAATATTGGc < 2:194770/148‑1 (MQ=255) ccAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAgg < 4:47698/124‑1 (MQ=255) gAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAggg < 6:69154/147‑1 (MQ=255) gCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGACAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGc > 1:63884/1‑149 (MQ=255) tGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGACAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGt < 2:63884/149‑1 (MQ=255) gAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGt > 8:211511/1‑148 (MQ=255) ggCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTa < 4:50290/148‑1 (MQ=255) gCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTaa < 7:186924/115‑1 (MQ=255) gCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTaa > 8:186924/1‑115 (MQ=255) gCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGta > 2:315816/1‑123 (MQ=255) gCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGta < 1:315816/123‑1 (MQ=255) tCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCa < 4:124217/149‑1 (MQ=255) cgccgACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCt > 8:29114/1‑148 (MQ=255) gccgACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTAGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCa < 4:373446/149‑1 (MQ=255) ccgACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCAc > 2:264447/1‑149 (MQ=255) aGACC‑CGGATGCCGCGCGGGCGGCAGTGTGTCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTa < 4:34462/131‑1 (MQ=255) aGACC‑CGGATGCCGCGCGGGCGGCAGTGTGTCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTa > 3:34462/1‑131 (MQ=255) acactGCCGCCCGCGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGt > 6:299883/5‑148 (MQ=255) ggATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCa < 7:228548/149‑1 (MQ=255) gATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAg < 7:362200/149‑1 (MQ=255) gATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAg > 8:349326/1‑149 (MQ=255) cgcgcgGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAgg > 7:386810/1‑145 (MQ=255) gcgcgGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAgg > 3:402176/1‑144 (MQ=255) gcgcgGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAgg > 2:132772/1‑144 (MQ=255) gcccgcgcggcAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGAt < 5:299883/143‑1 (MQ=255) cgggcggCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCtt < 8:386810/149‑1 (MQ=255) gcggcAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGcc < 1:145508/149‑1 (MQ=255) ggcAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACCTCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCg > 5:417161/1‑148 (MQ=255) tgCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGcc < 3:391894/148‑1 (MQ=255) ccTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCgg < 1:56313/148‑1 (MQ=255) ccTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGt > 7:227477/1‑149 (MQ=255) cTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAgg > 4:242429/1‑80 (MQ=255) cTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAgg < 3:242429/80‑1 (MQ=255) gCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCt > 1:18677/1‑102 (MQ=255) gCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCt < 2:18677/102‑1 (MQ=255) cACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGTCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGct > 7:46975/1‑149 (MQ=255) cACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGc < 1:354989/148‑1 (MQ=255) cTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGccc > 6:8944/1‑102 (MQ=255) cTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGccc < 5:8944/102‑1 (MQ=255) cTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCAcc > 4:241034/1‑112 (MQ=255) cTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCAcc < 3:241034/112‑1 (MQ=255) cTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCtctc > 4:288996/1‑149 (MQ=255) cAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATTCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCt < 1:120009/146‑1 (MQ=255) cAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCt > 2:120009/1‑146 (MQ=255) cAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCt > 5:17203/1‑146 (MQ=255) cAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCt < 6:17203/146‑1 (MQ=255) cAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAAc < 5:61276/149‑1 (MQ=255) aGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACg < 2:304628/149‑1 (MQ=255) aGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACg > 8:179829/1‑149 (MQ=255) ctagaCCTGCTACTGCCGGACTGTCTGTGAGGCAGTGTAAGACG‑ACTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCAGTTCTCCAGGTCTGGCAGTTCTTGCCGAAATGCCGGTTg < 6:271101/130‑1 (MQ=255) gaCCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGc > 3:148572/1‑149 (MQ=255) cGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTc > 6:86767/1‑149 (MQ=255) cGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTc > 3:369764/1‑149 (MQ=255) cGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTc < 3:253424/149‑1 (MQ=255) ttacaCTGCCTGACAGTCAGTCCGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGctc > 3:245624/5‑128 (MQ=255) ttacaCTGCCTGACAGTCAGTCCGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGctc < 4:245624/124‑1 (MQ=255) cTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTcgac > 7:284038/1‑149 (MQ=255) acaCTGCCTGACAGTCAGTCCGGCAGTGTAAGACGAAGTATATTGGCGTGCAGGGTGGCCGTTACATCCCGCAACCCTGCCCACACTTCACCAGGTCAGGCAGATCTTCCAGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTcga > 1:271744/3‑149 (MQ=255) tGCCTGACAGTCAGTCCGGCAGTGAAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATc > 5:107448/1‑149 (MQ=255) gCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCt > 2:140212/1‑149 (MQ=255) ccGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTg < 5:86767/149‑1 (MQ=255) gactgactGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTc > 5:292833/1‑149 (MQ=255) ctgactgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTc > 6:139532/1‑147 (MQ=255) tgactgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAg > 7:341301/1‑149 (MQ=255) tgactgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAg > 4:252498/1‑149 (MQ=255) ctgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAGTTc < 7:275783/149‑1 (MQ=255) tgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCAGCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAGTTc > 4:168959/1‑148 (MQ=255) tgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAg < 1:342568/77‑1 (MQ=255) tgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAg > 2:342568/1‑77 (MQ=255) tgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGATGATCTGTTCCAGTTc > 2:16197/1‑148 (MQ=255) tgTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAGTTc > 5:263693/1‑148 (MQ=255) tCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACtt < 2:69048/69‑1 (MQ=255) tCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAGTTCGa > 4:332149/1‑148 (MQ=255) aGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGTCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAGTTCGaaa < 8:46975/148‑1 (MQ=255) | CAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACC‑CGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACG‑AGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCACTTCACCAGGTCAGGCAGATCTTGCCGAAATGCCGGTTGCTCTCCTGGTAACGGAACGCCTCGACGATCTGTTCCAGTTCGAAA > NC_002947/5419875‑5420169 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |