Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,462,263 | T→C | 7.3% | D401D (GAT→GAC) ‡ | PP_4798 → | membrane‑bound lytic murein transglycosylase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,462,263 | 0 | T | C | 7.3% | 153.4 / 3.0 | 55 | D401D (GAT→GAC) ‡ | PP_4798 | membrane‑bound lytic murein transglycosylase |
Reads supporting (aligned to +/- strand): ref base T (22/29); new base C (2/2); total (24/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.94e-01 |
GGTGAGCCTGCTCGGGGATCGCTTCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGCGCGGCCCCGG > NC_002947/5462119‑5462405 | ggTGAGCCTGCTCGGGGATCGCTTCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCa < 3:240705/149‑1 (MQ=255) gCCTGCTCGGGGATCGCTTCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGATAATGCCATCGGCATTacc < 3:262026/149‑3 (MQ=255) cTCGGGGATCGCTTCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCggg < 7:197912/147‑1 (MQ=255) cTCGGGGATCGCTTAAGCGGCTGGGGCTTGATTGCCGGGAGCTGGCCGAAAGAGGACCTGCCGATCAGCCGCACCGAGCTCATGGAGT‑TTCAGAACTTGCTGAACAGCCGCGGGCATGATGCGTGTAATGCCGATGGCATTATCggg < 8:250379/147‑1 (MQ=255) ggATCGCTTCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATa < 1:38449/149‑1 (MQ=255) cGCTTCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCg > 4:288216/1‑149 (MQ=255) ttCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGc > 4:232912/1‑147 (MQ=255) cGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCTGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCaa < 1:270731/149‑1 (MQ=255) cGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCaa < 7:199363/149‑1 (MQ=255) cGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCaa < 4:282829/149‑1 (MQ=255) ggCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAAt < 8:58129/149‑1 (MQ=255) ggCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCaa > 6:386027/1‑149 (MQ=255) cATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGcc > 2:325984/1‑148 (MQ=255) cATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGcc < 1:325984/148‑1 (MQ=255) cATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGcc > 7:22635/1‑148 (MQ=255) ttGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCTGCAAGGCAATCCGCAATGCCCAg > 7:301189/1‑149 (MQ=255) ccGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCggg < 3:219311/113‑1 (MQ=255) ccGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCggg > 4:219311/1‑113 (MQ=255) cGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGACGCACCGAGCGCATTGAGT‑TGGAGAACTTGCTGAACAGCCGCGGGCATGAAGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGTCAATCCGCAATGCCCAGCAAg < 2:193287/149‑1 (MQ=255) cTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTgg < 5:386027/149‑1 (MQ=255) gCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGAt > 8:319326/1‑149 (MQ=255) ccGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATg < 3:232912/149‑1 (MQ=255) cGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATgg > 4:309007/1‑149 (MQ=255) ccTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGc < 7:302974/82‑1 (MQ=255) ccTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGc > 8:302974/1‑82 (MQ=255) cGCTCAGCCGCACCGAGCGCATGGAGTGTGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTa > 1:17722/1‑149 (MQ=255) cGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTAc < 7:319326/149‑1 (MQ=255) cTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTAccc > 5:90762/1‑149 (MQ=255) cTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTAc > 3:50313/1‑147 (MQ=255) cTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTAc < 4:50313/147‑1 (MQ=255) aGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGAc < 3:229560/149‑1 (MQ=255) aCCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCcac > 1:341023/1‑147 (MQ=255) ccGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAg > 1:145487/1‑149 (MQ=255) gcATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCtt < 1:253736/149‑1 (MQ=255) aTGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTga < 5:40190/149‑1 (MQ=255) gAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTgaga < 6:90762/148‑1 (MQ=255) cAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTgc < 2:145487/148‑1 (MQ=255) aGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTgcgc > 8:170731/1‑149 (MQ=255) aaCTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGAc > 3:158071/1‑122 (MQ=255) aaCTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGAc < 4:158071/122‑1 (MQ=255) aaCTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCca < 8:22635/149‑1 (MQ=255) cTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGt < 2:17722/148‑1 (MQ=255) cTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTa < 3:309007/149‑1 (MQ=255) tGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGt > 4:120384/1‑147 (MQ=255) aaCAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAg < 7:170731/148‑1 (MQ=255) ccGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTcc > 5:161037/1‑149 (MQ=255) gcgGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCgg < 2:341023/149‑1 (MQ=255) atgatgCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGc > 8:13789/1‑149 (MQ=255) gCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTgcgc > 3:314374/1‑149 (MQ=255) ccgatAATGCCATCGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGcgcg > 1:382175/5‑149 (MQ=255) gggTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGCGCgg < 3:120384/149‑1 (MQ=255) gatAATGCCATCGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTgc < 8:136573/113‑1 (MQ=255) gatAATGCCATCGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTgc > 7:136573/3‑115 (MQ=255) tAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGACCGCTGCGCGGccc < 8:210962/149‑1 (MQ=255) gCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGCGCGGCCCCgg > 5:241321/1‑148 (MQ=255) | GGTGAGCCTGCTCGGGGATCGCTTCAGCGGCTGGGGCTTCATTGCCGGCAGCTGGCCGAAAGAGGACCTGCCGCTCAGCCGCACCGAGCGCATGGAGT‑TGCAGAACTTGCTGAACAGCCGCGGGCATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGCGCGGCCCCGG > NC_002947/5462119‑5462405 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |