| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,462,393 | T→G | 5.8% | intergenic (+16/+18) | PP_4798 → / ← PP_4799 | membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,462,393 | 0 | T | G | 5.8% | 210.6 / 3.0 | 69 | intergenic (+16/+18) | PP_4798/PP_4799 | membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase |
| Reads supporting (aligned to +/- strand): ref base T (37/28); new base G (2/2); total (39/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 | |||||||||||
GCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCGGCA > NC_002947/5462249‑5462538 | gCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTgcgc > 3:314374/1‑149 (MQ=255) ccgatAATGCCATCGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGcgcg > 1:382175/5‑149 (MQ=255) gggTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCgg < 3:120384/149‑1 (MQ=255) tAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGACCG‑CTGCGCGGccc < 8:210962/149‑1 (MQ=255) gCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCgg > 5:241321/1‑148 (MQ=255) gCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCa < 6:241321/149‑1 (MQ=255) cATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCAc < 1:389808/149‑1 (MQ=255) aTTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACg > 2:228320/1‑149 (MQ=255) aTTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGATACACGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCTGCCCCGGTAAACTCACg > 1:258906/1‑149 (MQ=255) tCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCt > 6:288766/1‑149 (MQ=255) ggCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAAc < 6:161037/149‑1 (MQ=255) gCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAAc > 1:242207/1‑148 (MQ=255) gCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAAc < 2:242207/148‑1 (MQ=255) ccAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGaa > 7:150451/1‑146 (MQ=255) cAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGa < 8:150451/149‑1 (MQ=255) ccGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGc > 3:398535/1‑149 (MQ=255) cGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCt > 6:234189/1‑149 (MQ=255) ggCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTgcgc < 4:318289/108‑1 (MQ=255) ggCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTgcgc > 3:318289/1‑108 (MQ=255) ggCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTgcg > 1:56013/1‑107 (MQ=255) ggCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTgcg < 2:56013/107‑1 (MQ=255) cAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCAc < 4:398535/149‑1 (MQ=255) tCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAg > 2:249762/1‑149 (MQ=255) tGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGc < 8:301189/149‑1 (MQ=255) ccAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAACGGCATTCC‑GGGGCCGAATCCGCGGCCCGGGTATTATCACGCCGTGAACAGAACATGCACCGCAACAAGT‑‑GTTTga > 1:329567/1‑148 (MQ=255) ccAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTg > 3:127707/1‑148 (MQ=255) cAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGaa < 1:228320/149‑1 (MQ=255) aGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAATACTg > 2:38443/1‑149 (MQ=255) gCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTcc > 8:385004/1‑149 (MQ=255) tGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAg > 3:148881/1‑149 (MQ=255) gggATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGc < 5:234189/149‑1 (MQ=255) tGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCa > 6:94833/1‑149 (MQ=255) ggCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGGTGAACACTGTCCAGCCTCAc > 1:400291/1‑149 (MQ=255) gCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCAc < 4:314374/148‑1 (MQ=255) cggATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGc < 3:288216/149‑1 (MQ=255) tACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAggg > 7:229852/1‑149 (MQ=255) tACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAggg > 1:327019/1‑149 (MQ=255) aCCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACt < 4:264733/122‑1 (MQ=255) aCCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACt > 3:264733/1‑122 (MQ=255) cccGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAgggg < 7:13789/148‑1 (MQ=255) cccGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAgggg > 3:372087/1‑148 (MQ=255) ccGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGc > 7:109208/1‑148 (MQ=255) ccctgaaGCTGCTTTTGAGCCTGCGCCAGCAGTAA‑‑GCATTCG‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGc < 2:258906/143‑1 (MQ=255) acaAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCC‑CTGGGGGGCCCCGGTTATCTCACGGCCTGAACAACACCGGGGGCAGCACCACT‑‑GTTTGCTGTACACAGGTCAGCCTAGCCCGAGCCCCCACGGGCAAggaaac > 2:386229/1‑144 (MQ=255) tgctTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTTAACAGAGACTGCACCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCAACCGAGCAACCAGGGGCAAGCATACATACgg > 8:364978/1‑149 (MQ=255) tgctTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCgg < 4:148881/149‑1 (MQ=255) gctTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCCCCACT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGGCAGCATACATTCggg > 6:45479/1‑149 (MQ=255) ctTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCCTGGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATAc > 1:42550/1‑142 (MQ=255) ctTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATAc < 2:42550/141‑1 (MQ=255) cagTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTgcgc > 7:83960/1‑148 (MQ=255) tAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAAc > 4:393324/1‑149 (MQ=255) tAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAAc > 5:257164/1‑149 (MQ=255) tAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCCCCAAc > 8:248985/1‑149 (MQ=255) a‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCCCGCCCTGAAGAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACCCTGTCCAGCCTCACCCGAGCCCCCAGCGGCCAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAAccc > 5:192684/1‑149 (MQ=255) cATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGc < 4:372087/149‑1 (MQ=255) aTTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGGGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCg > 1:120628/1‑149 (MQ=255) aTTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGcc < 8:83960/149‑1 (MQ=255) aTTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGcc < 1:249762/149‑1 (MQ=255) ttCC‑GTGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCa < 8:229852/149‑1 (MQ=255) ttCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCa < 5:288766/149‑1 (MQ=255) acc‑GGGGCCG‑CGCAGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCAt < 4:389297/110‑1 (MQ=255) acc‑GGGGCCG‑CGCAGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCAt > 3:389297/2‑111 (MQ=255) cgcactgCCG‑CTGCGCGGCCCCGGTACTCTCCCGCCCTCAACACATCCGGCTCCAGCACCAGT‑‑GTTTGCTGAACCCTGTCCACCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGCGTCACAGTGCCCGCTGCGCCAACCCGcc < 8:323721/141‑1 (MQ=255) cc‑GGGGCCG‑CGCAGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAg > 1:187690/1‑148 (MQ=255) c‑GGGGCCG‑CGCAGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCa < 2:187690/149‑1 (MQ=255) ggCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCg < 3:393324/149‑1 (MQ=255) ccG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGCACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCaagatctg > 7:323721/1‑141 (MQ=255) ccG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCGGc < 5:94833/149‑1 (MQ=255) cG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCGGca > 7:285684/1‑149 (MQ=255) | GCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAA‑‑GCATTCC‑GGGGCCG‑CTGCGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGT‑‑GTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCGGCA > NC_002947/5462249‑5462538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |