| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,682,324 | A→C | 6.6% | R1523R (CGT→CGG) | PP_4988 ← | signal transduction histidine kinase CheA/CheY‑like receiver |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,682,324 | 0 | A | C | 6.6% | 264.4 / 7.9 | 88 | R1523R (CGT→CGG) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| Reads supporting (aligned to +/- strand): ref base A (43/39); new base C (4/2); total (47/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01 | |||||||||||
CGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGG > NC_002947/5682190‑5682472 | cGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCgg > 4:122034/1‑149 (MQ=255)cGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCgg < 2:15364/149‑1 (MQ=255)cGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCgg < 6:195247/149‑1 (MQ=255) ggTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCggg < 3:272654/149‑1 (MQ=255) tctTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCggg < 4:184979/144‑1 (MQ=255) tctTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCggg > 3:184979/1‑144 (MQ=255) ttCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCCCGGcgccgcgccgtg < 2:52248/142‑3 (MQ=255) ttCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCCCGGcgccgcgccgtg > 1:52248/1‑140 (MQ=255) ttCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACTGCGCGGCGCCGGGCCAAGc > 2:382864/1‑148 (MQ=255) ttCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAg < 1:279525/147‑1 (MQ=255) ttCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGc > 2:192505/1‑148 (MQ=255) ttCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGc > 3:213835/1‑148 (MQ=255) ccAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAAc > 5:252136/1‑149 (MQ=255) cagcagGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCggg < 7:183017/139‑1 (MQ=255) cagcagGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCggg > 8:183017/1‑139 (MQ=255) agcagGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTg > 7:303015/1‑149 (MQ=255) gcagGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTgg > 8:310322/1‑149 (MQ=255) gcagGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTgg > 2:208230/1‑149 (MQ=255) cagGGCCATGGCATGTACAGCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTAACTTGCGTACGGTTACCGAATAGTCCACCACCATCACCAGCAAGGCAcgg < 8:329169/124‑1 (MQ=255) cagGGCCATGGCATCTACTCCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGc > 4:345959/1‑149 (MQ=255) cagGGCCATGGCATCTACACCAACCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCAcgg > 7:329169/1‑124 (MQ=255) ggCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGtt < 7:183386/149‑1 (MQ=255) gCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTg > 5:152557/1‑149 (MQ=255) gCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGCCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATTGTCCACCACCATCACCAACAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTg < 1:315771/149‑1 (MQ=255) cATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGc > 6:255812/1‑149 (MQ=255) aTGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCACCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGc > 2:196706/1‑148 (MQ=255) ggCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTAc > 3:351874/1‑149 (MQ=255) gCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGTGTTGGCTAc < 1:208230/148‑1 (MQ=255) gCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTAc < 2:130386/148‑1 (MQ=255) cTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑cca > 6:262627/1‑149 (MQ=255) acacCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑ccacc > 3:337473/1‑149 (MQ=255) acacCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑ccacc > 6:70550/1‑149 (MQ=255) cacCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑ccacca > 8:111314/1‑149 (MQ=255) cacCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑ccacca < 1:192505/149‑1 (MQ=255) cacCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑ccac > 5:16487/1‑147 (MQ=255) cacCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑ccac > 2:263819/1‑147 (MQ=255) ccATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAgg < 4:351874/149‑1 (MQ=255) cATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAgg > 8:254794/1‑148 (MQ=255) cATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGc < 3:254686/149‑1 (MQ=255) gCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGc < 5:70550/149‑1 (MQ=255) gCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGc > 6:189208/1‑149 (MQ=255) cGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCa < 6:16487/149‑1 (MQ=255) cACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTc > 8:366697/1‑149 (MQ=255) cTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCgctg < 3:174245/149‑1 (MQ=255) aTGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCgctgct < 1:196706/148‑1 (MQ=255) tGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTgg > 4:91290/1‑149 (MQ=255) gCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGc > 8:222129/1‑149 (MQ=255) gcgcTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCcgcg > 3:151728/1‑147 (MQ=255) gcTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGc > 2:320553/1‑149 (MQ=255) cTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCt < 7:310322/149‑1 (MQ=255) cagcagGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACTATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTg > 5:130977/1‑147 (MQ=255) cagcagGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACTATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTg < 6:130977/147‑1 (MQ=255) cggcTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCcagcag < 7:111314/149‑1 (MQ=255) gTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCaa < 3:122034/148‑1 (MQ=255) ttACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAg > 8:31187/1‑148 (MQ=255) ttACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAg > 1:167929/1‑148 (MQ=255) ccTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAg < 5:398608/106‑1 (MQ=255) ccTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAg > 6:398608/1‑106 (MQ=255) ccTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAg < 1:55001/145‑1 (MQ=255) ccTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAg > 2:55001/1‑145 (MQ=255) ccTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATc < 6:152557/149‑1 (MQ=255) ccTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATc < 5:189208/149‑1 (MQ=255) cTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAAt > 2:255146/1‑147 (MQ=255) gCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGc < 5:36886/148‑1 (MQ=255) ggTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCAccc > 5:418751/1‑149 (MQ=255) ttACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCACGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCCGCAGGTCAAGACTCAGCACCACCCgg > 8:370327/1‑149 (MQ=255) aCCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGt < 7:130262/127‑1 (MQ=255) aCCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGt > 8:130262/1‑127 (MQ=255) aaTCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCg < 3:345959/149‑1 (MQ=255) aTCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGc < 8:303015/149‑1 (MQ=255) tCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCggg > 6:338115/1‑42 (MQ=255) tCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCggg < 5:338115/42‑1 (MQ=255) gTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGcc > 7:238918/1‑147 (MQ=255) gTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCca < 4:213835/149‑1 (MQ=255) caccaccaTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCcagca < 7:366697/149‑1 (MQ=255) ccaccaTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAgt < 4:151728/149‑1 (MQ=255) ccaTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTTGCCCAGCAGGTCAACAATCAGCGCCACCCGGCCAACGccc > 8:141565/1‑140 (MQ=255) ccaTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGccc < 7:141565/140‑1 (MQ=255) ccaTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTc < 7:31187/149‑1 (MQ=255) ccaTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTc < 8:238918/149‑1 (MQ=255) caTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCGTCCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTc > 1:110373/1‑149 (MQ=255) caTCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCg < 5:255812/149‑1 (MQ=255) aCCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGcccc < 6:252136/149‑1 (MQ=255) ccAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGccccc > 6:274827/1‑149 (MQ=255) cttggCCCGGCGCCGCGCCGTGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTc < 3:348322/136‑1 (MQ=255) cttggCCCGGCGCCGCGCCGTGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTc > 4:348322/4‑139 (MQ=255) ttggCCCGGCGCCGCGCCGTGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATaa > 4:99875/3‑149 (MQ=255) ttggCCCGGCGCCGCGCCGTGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATaa > 1:3961/3‑149 (MQ=255) aCGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCgg > 2:46750/1‑149 (MQ=255) | CGGTGCTCTTCCAGCAGGGCCATGGCATCTACACCATCCTTGGCCGTAAGCACGCTCATGCCGTGGCGCTCCAGCAGGCGGCTGGTTACCTTGCGTACGGTTACCGAATCGTCCACCACCATCACCAGCAAGGCACGGCGCGGCGCCGGGCCAAGCAACTGGCGTTGGCTACCG‑CCACCAGGCAAGCGGGCCAGCCGTCGCTGCTGGCCGCGCAGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGG > NC_002947/5682190‑5682472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |