| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,741,508 | A→T | 6.4% | intergenic (‑179/+49) | PP_5038 ← / ← PP_5039 | lipoprotein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,741,508 | 0 | A | T | 6.4% | 233.9 / 4.2 | 78 | intergenic (‑179/+49) | PP_5038/PP_5039 | lipoprotein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (41/32); new base T (3/2); total (44/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
GCCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCGGGC > NC_002947/5741365‑5741655 | gCCTGCTGTGACCTTCGACGGGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGa < 2:409335/149‑1 (MQ=255) cTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGAAGGGCACTACTGTGCGAATAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGCGAGc > 5:293935/1‑149 (MQ=255) tGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCg > 3:103098/1‑149 (MQ=255) cAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGc < 5:137090/149‑1 (MQ=255) ccTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGc < 8:300356/148‑1 (MQ=255) cTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTGCCTAAACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATAAATCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGt > 5:65718/1‑149 (MQ=255) gTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATg < 7:220155/149‑1 (MQ=255) gAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATAACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGcc > 3:128114/1‑149 (MQ=255) cctcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCAcag > 3:1557/1‑149 (MQ=255) tcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTcg‑‑c > 6:331719/1‑134 (MQ=255) tcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTcg‑‑c < 5:331719/134‑1 (MQ=255) ccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAgg > 4:342101/1‑149 (MQ=255) gTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGcccc > 7:141143/1‑149 (MQ=255) ccTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTgg < 4:103098/149‑1 (MQ=255) cTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTggg > 5:353744/1‑149 (MQ=255) ccccACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGc < 4:85027/147‑1 (MQ=255) ccACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCt > 4:114733/1‑147 (MQ=255) cACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCt > 4:322581/1‑146 (MQ=255) cACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCt > 2:57026/1‑146 (MQ=255) ccccTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAAc < 6:353744/149‑1 (MQ=255) cTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTcg > 3:122484/1‑110 (MQ=255) cTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTcg < 4:122484/110‑1 (MQ=255) cTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCgg > 2:207739/1‑149 (MQ=255) tGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCAAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGAc > 3:339556/1‑149 (MQ=255) ccTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCAAGGGGCCtgct < 2:377535/136‑4 (MQ=255) cacCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTc > 7:327830/1‑149 (MQ=255) ccATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCa < 5:82920/149‑1 (MQ=255) aTTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGTCTCAGAACCGGGACCCAGGCTCCAGc < 8:4171/149‑1 (MQ=255) aTTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCgg > 3:15419/1‑134 (MQ=255) aTTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCgg < 4:15419/134‑1 (MQ=255) ggTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCaa > 6:243414/1‑148 (MQ=255) ccACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtct > 7:259918/1‑149 (MQ=255) ccACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtct > 8:8444/1‑149 (MQ=255) cACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAAGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtctc > 1:101128/1‑149 (MQ=255) ctactGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCtt < 8:259918/149‑1 (MQ=255) ctGTGCGATTAATCACAAAGCATTACTCCGGCGCCCAATAAAAAAGGCCGCCCCCAATGGGCGCGGCCT‑TGCGTCG‑‑CGAGGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTc < 6:380517/147‑1 (MQ=255) tgCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTgg > 8:231489/1‑149 (MQ=255) cGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGt < 7:231489/148‑1 (MQ=255) aaTCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCgg > 7:78392/1‑149 (MQ=255) aTCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCgg < 4:128114/148‑1 (MQ=255) aTCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCgg < 1:390/148‑1 (MQ=255) aTCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCgg > 2:390/1‑148 (MQ=255) aTCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGc > 5:184501/1‑149 (MQ=255) tCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCtggagc > 6:293292/1‑144 (MQ=255) tCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGcc > 1:286273/1‑149 (MQ=255) cacaAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCg > 8:306454/1‑149 (MQ=255) acaAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGc > 3:388867/1‑149 (MQ=255) caAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCGATGGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCg > 1:116319/1‑149 (MQ=255) caAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAt > 4:372139/1‑126 (MQ=255) caAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAt < 3:372139/126‑1 (MQ=255) aGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCa > 5:253170/1‑149 (MQ=255) tAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGccc > 3:230723/1‑74 (MQ=255) tAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGccc < 4:230723/74‑1 (MQ=255) aaTCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTGCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCAcc < 8:327830/148‑1 (MQ=255) aTCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTGGAGCGGCCGAGCACCAg < 2:126209/149‑1 (MQ=255) aTCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTGGAGCGGCCGAGCACCAg < 5:293292/149‑1 (MQ=255) aTCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAg > 3:200772/1‑149 (MQ=255) aTCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAg < 4:339556/149‑1 (MQ=255) tGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtg > 1:200785/1‑149 (MQ=255) gcCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcgg < 3:342101/149‑1 (MQ=255) cccAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTGTGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTT‑GGCCTCAGAACCGGGACCCAGGCTCCAGC‑AAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtg > 1:270970/1‑149 (MQ=255) cAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgc > 8:307377/1‑149 (MQ=255) cAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgc < 4:1557/149‑1 (MQ=255) cAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgc > 7:102908/1‑149 (MQ=255) cAATAAAAAAGGCCGCCCCAAATGGGAGCGGCCT‑TGCCTCG‑‑CGATGCCTGCACAGCACGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATATCATCGCTCCTGCTCGGCCGCTCCAGCACAAGGTagccgtgc > 2:10375/1‑149 (MQ=255) aaTAAAAATGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg < 7:8444/149‑1 (MQ=255) aaTAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg < 6:184501/149‑1 (MQ=255) tAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCggg < 3:114733/149‑1 (MQ=255) aaaaGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAg > 5:84286/1‑149 (MQ=255) aaaaGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAg > 5:19208/1‑149 (MQ=255) ggCCGCTCCCATTGGGGGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg > 1:242750/1‑140 (MQ=255) ggCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGcc < 2:286273/149‑1 (MQ=255) gccgctCCCATTGGGGGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg < 7:274442/139‑1 (MQ=255) gccgctCCCATTGGGGGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg > 8:274442/1‑139 (MQ=255) cccAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCg < 5:243414/149‑1 (MQ=255) ccATTGGGGGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCgg < 7:357857/149‑1 (MQ=255) ccATTGGGGGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCgg > 8:357857/1‑149 (MQ=255) ccAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCgg < 6:65718/149‑1 (MQ=255) aTGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCGGGc > 8:234463/1‑148 (MQ=255) | GCCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCT‑TGCGTCG‑‑CGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCGGGC > NC_002947/5741365‑5741655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |