| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,866,697 | A→C | 10.0% | intergenic (+20/+37) | PP_5140 → / ← thyA | MerR family transcriptional regulator/thymidylate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,866,697 | 0 | A | C | 10.0% | 258.8 / 13.5 | 89 | intergenic (+20/+37) | PP_5140/thyA | MerR family transcriptional regulator/thymidylate synthase |
| Reads supporting (aligned to +/- strand): ref base A (40/40); new base C (4/5); total (44/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTT > NC_002947/5866555‑5866839 | cTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCcgc > 2:361246/1‑149 (MQ=255) gcggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCcgc > 5:299249/1‑147 (MQ=255) gcggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCcgc < 6:299249/147‑1 (MQ=255) cggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTTCACCCGCGaa < 3:371730/149‑1 (MQ=255) ggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑CTCGCGGGTGAACCCGCGAAGAgg > 6:358600/1‑149 (MQ=255) gcgcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑CTCGCGGGTGAACCCGCGAAGAGGt < 5:358600/149‑1 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAAc > 5:295802/1‑135 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAAc < 6:295802/135‑1 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCa < 2:182237/149‑1 (MQ=255) cTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAg < 7:374999/149‑1 (MQ=255) tGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTTCACCCGCGaa < 1:264929/140‑1 (MQ=255) tGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTTCACCCGCGaa > 2:264929/1‑140 (MQ=255) cAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGtt < 8:155238/148‑1 (MQ=255) cAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGtt < 6:84013/148‑1 (MQ=255) cAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTc < 1:62425/149‑1 (MQ=255) aCGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCt > 2:109865/1‑148 (MQ=255) cgcgCAGGGGAGTGAATGCGCGATCTTTCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTaa < 6:52494/149‑1 (MQ=255) cgcgCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGAGAAACGGGGCGGTTT‑CTTTACCGGATTCCGATCATTCACATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGA‑TTCGCGGGTTAACCCGCGAAGAGGTCAGTTCTaa < 2:124300/149‑1 (MQ=255) cgcgCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTaa < 1:262910/149‑1 (MQ=255) gggAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGt > 8:348028/1‑133 (MQ=255) gggAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATaga < 4:358672/149‑1 (MQ=255) ggAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATagag < 3:251944/149‑1 (MQ=255) aGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTCT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGAt < 6:226022/149‑1 (MQ=255) gTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATc > 6:370623/1‑149 (MQ=255) aaTGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTAt < 1:69244/149‑1 (MQ=255) gcgATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATc < 5:74761/141‑1 (MQ=255) gcgATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATc > 6:74761/1‑141 (MQ=255) gcgATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGAc > 6:12306/1‑149 (MQ=255) gATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTTCACCCGCGAagctttt < 4:261318/120‑6 (MQ=255) gATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTTCACCCGCGAagctttt > 3:261318/1‑115 (MQ=255) tGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGt > 6:276416/1‑148 (MQ=255) gagaCAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTc < 1:361246/147‑1 (MQ=255) gaCAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATc < 1:109865/148‑1 (MQ=255) aaaCGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGgcg > 6:363568/1‑149 (MQ=255) aaaCGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGgcg > 6:180446/1‑149 (MQ=255) aaaCGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGACTAAAAAACATTCGCGGGTGAACCCGCGAACAGGTCAGTTAAAACAATAGAGTAATTAAAGACCCCCATCGGCGATTTCATCgcc > 1:120397/1‑147 (MQ=255) aaaCGGGGCGGTAT‑AGGTACCGGATACCGAACATTCCCAAGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGgcg > 2:197453/1‑149 (MQ=255) aCGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCa < 5:276416/149‑1 (MQ=255) aCGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGACAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCa > 7:291344/1‑149 (MQ=255) ggggCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATg < 5:370623/149‑1 (MQ=255) ggggCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATg > 5:30435/1‑149 (MQ=255) ggggCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATg < 4:402543/149‑1 (MQ=255) gggCGGTAT‑CGGTACCGTATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGACAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATgg < 3:280139/149‑1 (MQ=255) gggCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACaa > 2:100847/1‑105 (MQ=255) gggCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACaa < 1:100847/105‑1 (MQ=255) gggCGGTAT‑CGGTACCGGATACCGAACATCCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATgg < 5:363568/149‑1 (MQ=255) ttcGGTATCCGGTACC‑GATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGt > 3:189290/3‑149 (MQ=255) gCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTg > 8:187237/1‑149 (MQ=255) ggTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCt > 2:110443/1‑149 (MQ=255) gTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCt > 8:34629/1‑148 (MQ=255) gTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCcgcg > 1:235830/1‑75 (MQ=255) gTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCcgcg < 2:235830/75‑1 (MQ=255) ggATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGc < 1:316524/136‑1 (MQ=255) ggATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGc > 2:316524/1‑136 (MQ=255) gATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccag > 1:157005/1‑149 (MQ=255) aTACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccagc < 5:180446/149‑1 (MQ=255) cGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccagccag > 7:64391/1‑148 (MQ=255) gAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGa > 5:62067/1‑148 (MQ=255) aTTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCa < 8:64391/149‑1 (MQ=255) ccATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTc > 4:201320/1‑123 (MQ=255) ccATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTc < 3:201320/123‑1 (MQ=255) aTGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGaaa < 8:25748/140‑1 (MQ=255) aTGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGaaa > 7:25748/1‑140 (MQ=255) tgtgGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCt > 3:233979/1‑149 (MQ=255) tCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCTCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCa < 1:197453/149‑1 (MQ=255) tCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTg > 4:264362/1‑105 (MQ=255) tCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTg < 3:264362/105‑1 (MQ=255) aCGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGc > 5:94533/1‑149 (MQ=255) gggCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCa > 1:392606/1‑149 (MQ=255) gggCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCa > 3:387615/1‑149 (MQ=255) ggCATTGAGCAAAAAGC‑TTCGAGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGTCGCTGTCATCTGCACATGGTTCTCATAGCCTTCAAGCCAGAAATCACTCGGCTCAATCTTCTCCATCCAc < 1:50102/149‑1 (MQ=255) gCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCAc > 4:70602/1‑148 (MQ=255) ttGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCg < 5:12306/149‑1 (MQ=255) ccAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTtctc > 2:168070/1‑133 (MQ=255) ccAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTtctc < 1:168070/133‑1 (MQ=255) ccAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCa < 2:392606/149‑1 (MQ=255) ccAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCa > 4:354508/1‑149 (MQ=255) cAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCa > 3:168380/1‑148 (MQ=255) cAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCa > 6:147720/1‑148 (MQ=255) aaaaGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATa > 6:90014/1‑149 (MQ=255) ctc‑TTCGCGGGTTCACCCGCGAAGCGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGaaa < 7:126375/106‑1 (MQ=255) ctc‑TTCGCGGGTTCACCCGCGAAGCGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGaaa > 8:126375/3‑108 (MQ=255) c‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGc < 6:30435/149‑1 (MQ=255) ttCGCGGGTTCACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATa > 3:218637/1‑143 (MQ=255) ttCGCGGGTTCACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATa < 4:218637/143‑1 (MQ=255) ttCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGc > 2:392560/1‑138 (MQ=255) ttCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGc < 1:392560/138‑1 (MQ=255) gcgGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAg < 4:189290/148‑1 (MQ=255) cgGGTGAACCCTCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGtt < 5:147720/149‑1 (MQ=255) | CTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTAT‑CGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTGAGCCAAAAGC‑TTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTT > NC_002947/5866555‑5866839 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |