| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,887,061 | A→G | 6.5% | intergenic (‑46/‑84) | PP_5161 ← / → PP_5162 | lysophospholipase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,887,061 | 0 | A | G | 6.5% | 321.3 / 8.5 | 108 | intergenic (‑46/‑84) | PP_5161/PP_5162 | lysophospholipase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (52/49); new base G (4/3); total (56/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.98e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
CGGTCGGGGTGAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCGTA > NC_002947/5886915‑5887204 | cGGTAGGGGTGAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCTAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACg < 4:97630/149‑1 (MQ=255) gggTGAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGc > 7:344446/1‑149 (MQ=255) tGAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGc > 7:17172/1‑149 (MQ=255) aaaGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTc < 5:176194/149‑1 (MQ=255) aaaGGCAGGGGGCATCGGGTACATCCACATTGATGCAACTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCACGAACAACCAGCAACGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTc > 6:197603/1‑149 (MQ=255) aaGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTGCGTCGCGAAAGGCCGCTcc < 4:95257/149‑1 (MQ=255) aGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAg < 2:200626/149‑1 (MQ=255) ggggCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAgg > 8:240492/1‑148 (MQ=255) ggggCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTAAACTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCATTCTCGACTCAAGGCCGCTCACACAgg > 6:71752/1‑148 (MQ=255) cATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCg > 6:363068/1‑149 (MQ=255) ggTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGgcgc > 3:109209/1‑148 (MQ=255) ggTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATCGCAAGCTTGCTCACCTCGAACAACTAGCATCGAACTA‑ATTGCGCGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCACACACGGATCGgcga > 8:34154/1‑147 (MQ=255) cacaTTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCtttt < 8:344446/148‑1 (MQ=255) acaTTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCttt > 2:310010/1‑146 (MQ=255) aTTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGaa < 7:357868/149‑1 (MQ=255) gATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCTAACAACCAGCATCGAACTA‑ATTGCGGGAGCGCCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGaaa < 1:310010/148‑1 (MQ=255) aTGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACTTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAAtt > 4:86526/1‑148 (MQ=255) gCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGa < 4:29896/148‑1 (MQ=255) gCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAg > 5:159528/1‑149 (MQ=255) cAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGc < 4:109209/149‑1 (MQ=255) cAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGc < 5:363068/149‑1 (MQ=255) tATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGGATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCTCAGGGATCGGCGCCTGCTTTTAGAAATTGAGCAAGa < 4:363847/149‑1 (MQ=255) ttGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCttt > 3:144752/1‑131 (MQ=255) ttGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCttt < 4:144752/131‑1 (MQ=255) aTCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGGAATTGAGCAAGACAGtt > 3:336215/1‑149 (MQ=255) aTCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGtt > 7:266820/1‑149 (MQ=255) tCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGtt < 6:159528/148‑1 (MQ=255) tCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTg > 8:6929/1‑149 (MQ=255) tCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTg > 3:81288/1‑149 (MQ=255) tCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACATCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCTCCAGCTTTTAGAAATTGAGCAAGACAGTTg > 3:75865/1‑149 (MQ=255) ggAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCtt > 6:341300/1‑149 (MQ=255) tCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCca > 3:233619/1‑148 (MQ=255) tCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGTGGGAGCG‑GCCTTGCGTCGCGAAAGGCCGCTCCcgcaa > 3:273148/1‑99 (MQ=25) tCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGTGGGAGCG‑GCCTTGCGTCGCGAAAGGCCGCTCCcgcaa < 4:273148/100‑2 (MQ=25) tCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAg > 7:385252/1‑149 (MQ=255) tCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAg > 2:119231/1‑149 (MQ=255) cAGCTCTGGCCGGCGCCATGGCAATCTTGCTCTCCTCGAACAACCAGCATCGATCTA‑ATTGCGTTAGCG‑GCCTTTCGCGACTCAAGGCCGCTCCCACAGTTATCGTCGCCAGCTTTTAGAATTTTAGCAAGACAGTTGCTTCCACaa < 8:245863/147‑1 (MQ=255) cAGCTCTGGCCGGAGGCATGGGAAGCTTGCTCACATCTAACAAAAAGCATCTAACTA‑ATTGCGGGAGGG‑GCCTTTCTCGACGCAAGGCAGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCcac < 7:34154/145‑1 (MQ=25) aGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAgg < 5:341300/148‑1 (MQ=255) aGCTCTGGCCGGCGCCATGGCAAGCTGGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAgg < 5:197603/148‑1 (MQ=255) gCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTcc > 2:124915/1‑141 (MQ=255) gCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTcc < 1:124915/141‑1 (MQ=255) tctGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGc > 7:162229/1‑124 (MQ=255) tctGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGc < 8:162229/124‑1 (MQ=255) ctGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACATCCAGCATCGAACTATATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCa > 1:100316/1‑149 (MQ=255) gCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCAc < 4:81288/146‑1 (MQ=255) gCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGa < 8:17172/149‑1 (MQ=255) gCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGa < 1:119231/149‑1 (MQ=255) gCCGGCGCCATGGCAAGCTGGCTCACCGCGAACAACATGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCAAAGGGATCGGCGCCAGCTTTTAGTAATTGAGCAAGACAGTTGCTTCCACAAGGGCCAc < 4:75865/146‑1 (MQ=37) ccGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAg > 4:223761/1‑139 (MQ=255) ccGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAg < 3:223761/139‑1 (MQ=255) cGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAg < 6:164550/89‑1 (MQ=255) cGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAg > 5:164550/1‑89 (MQ=255) ccATGGCAAGCTTGCTCACTTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCa < 3:86526/149‑1 (MQ=255) ccATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCa < 8:109605/149‑1 (MQ=255) cATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCAt > 3:57660/1‑149 (MQ=255) aaGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAgg > 7:278204/1‑127 (MQ=255) aaGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAgg < 8:278204/127‑1 (MQ=255) cTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGAAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTTCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAat < 8:266820/148‑1 (MQ=255) tCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAatca > 6:288437/1‑149 (MQ=255) aCCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCa < 7:74420/132‑1 (MQ=255) aCCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAatcatc < 6:375964/149‑1 (MQ=255) cTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGa < 7:15114/92‑1 (MQ=255) cTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGActct > 4:334039/1‑127 (MQ=255) cTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGActct < 3:334039/127‑1 (MQ=255) cTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAAtcatca > 2:46983/1‑148 (MQ=255) cTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAAtcatca > 7:33706/1‑148 (MQ=255) cTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAAtcatca > 2:393058/1‑148 (MQ=255) cTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCaa < 7:6929/149‑1 (MQ=255) tCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCaaa > 2:189348/1‑149 (MQ=255) gAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCAt < 6:27287/128‑1 (MQ=255) gAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCAt > 5:27287/1‑128 (MQ=255) gAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAAcc > 4:172720/1‑149 (MQ=255) aacCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCtg > 6:284002/1‑149 (MQ=255) acCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCtgt < 4:57660/149‑1 (MQ=255) gCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCAc < 8:385252/149‑1 (MQ=255) cATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCa < 3:39897/117‑1 (MQ=255) cATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCa > 4:39897/1‑117 (MQ=255) aTCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACgg < 5:284002/149‑1 (MQ=255) aTCCAACTA‑ATTGCGGGAGCT‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCAAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACgg < 3:59552/149‑1 (MQ=255) aaCTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCAt > 7:265768/1‑149 (MQ=255) aCTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGa < 1:31411/73‑1 (MQ=255) aCTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGa > 2:31411/1‑73 (MQ=255) aCTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATc < 1:189348/149‑1 (MQ=255) tA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGc > 7:283023/1‑149 (MQ=255) aTTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGc < 3:172720/147‑1 (MQ=255) ctgtgggAGCG‑GCCTTGCGTCGCGAAAGGCCGCTCCCGCAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCtt > 5:222502/5‑149 (MQ=38) gCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCttg < 8:265768/148‑1 (MQ=255) cGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCttgtt > 2:390320/1‑149 (MQ=255) aGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTc < 1:159403/149‑1 (MQ=255) aGCG‑GCCTTTCGCGACGCAAGGCCGCTCACACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTc < 8:283023/149‑1 (MQ=255) aGCG‑GCCTTGCGTCGCGAAAGGCCGCTCCCACAGGGATCGGCGCCTGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTc > 1:286667/1‑149 (MQ=38) aGCG‑GCCTTGCGTCGCGAAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCtt > 5:102744/1‑142 (MQ=38) aGCG‑GCCTTGCGTCGCGAAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCtt < 6:102744/142‑1 (MQ=38) gCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGgcg > 7:225903/1‑149 (MQ=255) ccTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGgcgc > 3:49224/1‑149 (MQ=255) cTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGcc > 3:294424/1‑149 (MQ=255) tttCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCg > 6:71327/1‑149 (MQ=255) tttCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCg > 7:97038/1‑149 (MQ=255) cgcgACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCGTa < 1:390320/148‑1 (MQ=255) | CGGTCGGGGTGAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTA‑ATTGCGGGAGCG‑GCCTTTCGCGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCGTA > NC_002947/5886915‑5887204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |