| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,995,020 | T→C | 6.3% | intergenic (+148/+29) | PP_5251 → / ← PP_5252 | transporter/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,995,020 | 0 | T | C | 6.3% | 233.1 / 4.3 | 80 | intergenic (+148/+29) | PP_5251/PP_5252 | transporter/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (40/34); new base C (3/2); total (44/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
TGCCGGCCCTTACGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGC > NC_002947/5994873‑5995167 | tGCCGGCCCTTACGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTAtt > 8:273232/1‑149 (MQ=255) gCCCTTACGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAGGGGGCCAGTTATTGGccc < 5:373598/149‑1 (MQ=255) gCCCTTACGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGccc > 6:98957/1‑149 (MQ=255) ccTTACGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGGAGACACACCCC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGccccc > 1:294961/1‑149 (MQ=255) aCGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑TGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGt < 6:273577/147‑1 (MQ=255) cGGCCCTTTAGCGTGTGAACCCGCTCCTACACAGATCTTCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AATGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑Tc < 8:316911/148‑1 (MQ=37) cGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑GAGGGCCGGCACTGAAGAGACAAGAAAGGGGCCAGGTAGGGGCCCCCGG‑TCg > 6:408868/1‑149 (MQ=37) ggCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGt < 7:125766/149‑1 (MQ=255) cccATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTc > 4:103709/1‑148 (MQ=255) ccATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGACAGGGGCCAGTTATTGGCCCCCGT‑TCGTcac > 5:292053/1‑149 (MQ=255) cATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTcaca > 3:321898/1‑149 (MQ=255) aTTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTcaca > 6:42296/1‑148 (MQ=255) ttCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACAtc < 6:38950/149‑1 (MQ=255) gcgGGTGAACCCGCTCCTACACAGATCTGCGGTACACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGACTAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATCGGCCCCCGT‑TCGTCACAtcag < 1:320969/149‑1 (MQ=38) ggTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAATAACTGGcccctt < 6:62430/132‑3 (MQ=255) ggTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAATAACTGGcccctt > 5:62430/1‑130 (MQ=255) gAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATcagctcagct > 3:223745/1‑149 (MQ=255) cccGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAg < 3:103709/149‑1 (MQ=255) cTCCTACACAGATCTGCGGTAGACACTCACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAg < 4:321898/149‑1 (MQ=255) cTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAg < 7:173208/149‑1 (MQ=255) acacAGATCTGCGGTAGACACACACCAGGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCtt > 1:4476/1‑139 (MQ=255) acacAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCtt < 2:4476/138‑1 (MQ=255) cacaGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGGCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAg > 1:388789/1‑148 (MQ=255) gATCTGCGGTAGACACAAACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACAAGCGA‑AAGGGCCTGAACTGAAGACACAAGAAAGGGGACAGTTATTGGCCCCCGT‑TAGTAACATAAGATCAGATTAGAAAGCGAAGCACg > 5:333015/1‑148 (MQ=255) cGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGaa < 4:223745/144‑1 (MQ=255) cGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGcc > 8:140426/1‑149 (MQ=255) gTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCa < 8:51826/149‑1 (MQ=255) tAGACACACACC‑GGACGTTGTAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGccc < 5:98957/147‑1 (MQ=255) gACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAATAACTGGcccct < 6:6160/100‑2 (MQ=25) gACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAATAACTGGcccct > 5:6160/1‑99 (MQ=25) acacacC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCAGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCAc < 7:140426/149‑1 (MQ=255) acacC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCAccc < 7:273232/149‑1 (MQ=255) gACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAg > 1:231160/1‑149 (MQ=255) aCGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGc > 7:301901/1‑149 (MQ=255) ttGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGGCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCt < 2:388789/149‑1 (MQ=255) ttGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCt < 2:294961/149‑1 (MQ=255) tGGAACCAGGCGGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCt < 4:48096/148‑1 (MQ=255) ggAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTg > 2:353580/1‑148 (MQ=255) aaCAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCAc < 2:186167/116‑1 (MQ=255) aaCAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCAc > 1:186167/1‑116 (MQ=255) aaCAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAg < 5:42296/149‑1 (MQ=255) aCAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAg > 1:160014/1‑148 (MQ=255) gCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCAtt > 2:18899/1‑149 (MQ=255) gTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTAc < 8:301901/149‑1 (MQ=255) gTAGGAGCGGGTTTACCCGCAA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCACCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCgg > 6:117660/1‑149 (MQ=255) tttcgCGGGTAAACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑a > 1:400246/5‑149 (MQ=255) aGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑a > 6:11300/1‑149 (MQ=255) gCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCt > 5:81558/1‑127 (MQ=255) gCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCt < 6:81558/127‑1 (MQ=255) gTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAACGGGGCCAGTTATTGGCCACCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGaa > 6:409651/1‑149 (MQ=255) gTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGGTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCACTGCAAGTCATTTACCGGC‑ACCCTcca > 6:309135/1‑146 (MQ=255) aCCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGcc > 5:368264/1‑149 (MQ=255) ccGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGt > 8:237194/1‑55 (MQ=255) ccGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGt < 7:237194/55‑1 (MQ=255) ccGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCcgc < 8:44794/149‑1 (MQ=255) ccGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCcgc > 7:44794/1‑149 (MQ=255) gcgA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGTGTCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCcgcg > 1:106232/1‑149 (MQ=255) gcgA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCAACCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCgcgc > 3:309176/1‑149 (MQ=255) agA‑AAGGTCCGGCACTGAAGACACAAGAAAGTTGCCAGTTATTGGCACCCGT‑TCGTAACATCAGCTCAGCTTAGAAAGCGAAGAAAGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGTC‑ACGCTCGAATGCCgcgca < 6:333015/148‑2 (MQ=255) aaGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCttt > 5:412729/1‑149 (MQ=255) gggCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTc > 4:165702/1‑149 (MQ=255) cGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTgg < 6:163650/149‑1 (MQ=255) ggCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCTACGCTCGAATGCCGCGCCTTTTCGTgg < 1:18899/149‑1 (MQ=255) cTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCtgtg > 4:398727/1‑149 (MQ=255) aaGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTgc < 2:106232/147‑1 (MQ=255) aaGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCAAATGCCGCGCCTTTTCGTGGCTGTgc < 5:117660/147‑1 (MQ=255) acaAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCCCCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCCTGca > 7:373253/1‑149 (MQ=255) acaAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGca > 5:41881/1‑149 (MQ=255) aaGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGc < 4:225090/111‑1 (MQ=255) aaGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCt > 5:336654/1‑112 (MQ=255) aaGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCt < 6:336654/112‑1 (MQ=255) aGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCacac > 1:280267/1‑149 (MQ=255) aaaGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTgc < 1:194786/137‑1 (MQ=255) aaaGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTgc > 2:194786/1‑137 (MQ=255) cgggggCCAATAACTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCAcacca > 7:345885/3‑148 (MQ=255) gggCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAg > 3:275612/1‑149 (MQ=255) aGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAgg > 7:312613/1‑145 (MQ=255) aGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAgg < 8:312613/145‑1 (MQ=255) gTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCAGTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGc > 3:269949/1‑149 (MQ=255) ttATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCt < 5:408868/149‑1 (MQ=255) aTTGGCCCCAGT‑TCGTCAAATCAGCACAGCTTAGAAAGCTAAGCACGCACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCAGCGCCTTTTCGTGGCTGTGCGCATCCACACCACAAGGCCCGCTGc > 6:210586/1‑149 (MQ=255) | TGCCGGCCCTTACGGCCCATTCGCGGGTGAACCCGCTCCTACACAGATCTGCGGTAGACACACACC‑GGACGTTGGAAACAGGCCGTTGTAGGAGCGGGTTTACCCGCGA‑AAGGGCCGGCACTGAAGACACAAGAAAGGGGCCAGTTATTGGCCCCCGT‑TCGTCACATCAGCTCAGCTTAGAAAGCGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGC‑ACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGC > NC_002947/5994873‑5995167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |