| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,104,054 | T→A | 8.8% | intergenic (+32/‑82) | PP_5353 → / → PP_5354 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,104,054 | 0 | T | A | 8.8% | 307.3 / 13.1 | 108 | intergenic (+32/‑82) | PP_5353/PP_5354 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (50/48); new base A (6/4); total (56/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 108 total aligned reads displayed.
GAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGCTTC > NC_002947/6103911‑6104199 | gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 3:63115/1‑149 (MQ=255)gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 1:244951/1‑149 (MQ=255) aagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCgg > 7:141483/1‑149 (MQ=255) aagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCAGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTAGCCCgg > 6:196442/1‑149 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt < 5:182577/149‑1 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt < 1:209921/149‑1 (MQ=255) tgaacacTTCGCCCTGGTCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt > 7:91422/7‑149 (MQ=255) cgcgCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGtttt < 6:78470/148‑1 (MQ=255) cgcgCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGtttt < 7:251706/148‑1 (MQ=255) cgcgCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGttct < 4:188291/148‑3 (MQ=255) gcgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttg < 2:143604/149‑1 (MQ=255) gcgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGttctgt > 2:253245/1‑145 (MQ=255) gcgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGttctg < 6:389414/148‑4 (MQ=255) cTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctt < 3:314606/149‑1 (MQ=255) ttCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgcttt > 3:115196/1‑149 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCTTAAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctttt < 4:241752/148‑1 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctttt < 6:2514/148‑1 (MQ=255) cGACCAGGGCGAAGTATTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctttt < 8:8740/148‑1 (MQ=255) gACCAGGGCTAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctttt < 1:110265/148‑1 (MQ=255) aGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCaaa < 1:242505/149‑1 (MQ=255) tCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAg > 8:16225/1‑149 (MQ=255) cAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAgg > 5:133368/1‑149 (MQ=255) cAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAgg > 7:239298/1‑149 (MQ=255) gAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGta > 6:395037/1‑148 (MQ=255) aaaGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGtat > 6:123316/1‑148 (MQ=255) aaaGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAAAACCCCGGGCAAGCCCGGGGttctgt > 1:312462/1‑116 (MQ=255) aaaGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAAAACCCCGGGCAAGCCCGGGGttctgt < 2:312462/120‑5 (MQ=255) aGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAg < 2:93287/149‑1 (MQ=255) gCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAgg < 7:327250/149‑1 (MQ=255) tGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGgcg > 3:236840/1‑149 (MQ=255) aTGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGt > 3:139651/1‑149 (MQ=255) aTGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTCCTTTTGACAAAGTTGG‑‑CTACTAGGGTATAAGGCGCAGCGt > 8:356405/1‑149 (MQ=255) gTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGt < 5:243859/149‑1 (MQ=255) gTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGt > 3:96432/1‑149 (MQ=255) cgcgCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCa < 3:387850/148‑1 (MQ=255) aaGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGt > 2:23406/1‑148 (MQ=255) ggCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCag < 7:16225/149‑1 (MQ=255) gCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCa > 3:364278/1‑147 (MQ=255) cggctaCCAGCCAAGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCagag > 3:326214/6‑149 (MQ=255) gagaACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCagag > 5:144280/1‑148 (MQ=255) agaACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAgg > 2:120413/1‑148 (MQ=255) gaACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAgg > 5:149095/1‑147 (MQ=255) gaACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCAGCTAGGTCAGAgg > 6:211392/1‑147 (MQ=255) aaCCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAg > 3:220221/1‑149 (MQ=255) aaCCAGCCTAGGCTGGTAACCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAAAACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGTT‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAg > 6:160512/1‑149 (MQ=255) aCCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAg < 8:239298/148‑1 (MQ=255) ccAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAg < 4:209303/136‑1 (MQ=255) cAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTg > 1:221093/1‑148 (MQ=255) cAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGATGAGTGATAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAATGCGCAGAGTTGTCATCTAGGTCAGAGTAAGtt > 6:316583/1‑147 (MQ=255) gCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAAc < 4:236840/149‑1 (MQ=255) gCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAAc < 6:149095/149‑1 (MQ=255) ccTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAAcc > 5:122089/1‑149 (MQ=255) ggCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTg > 3:123452/1‑148 (MQ=255) gCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTgg > 7:206155/1‑148 (MQ=255) ggTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaag > 3:295990/1‑148 (MQ=255) ccGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGa < 8:206155/149‑1 (MQ=255) ccGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGa < 2:244951/149‑1 (MQ=255) gTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCg < 4:63115/149‑1 (MQ=255) tcagtaaaaaCA‑GCTAATCGCTGCTTGCTAAACACAGAACCCCGGGCTTTCCCGTGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGTGTATAAGGCGCAGCGTTGTCATCTAGGTCAGATGAAGTGAACCGTGGAAGAAGTGATCGaa < 5:316583/142‑1 (MQ=255) tCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaac < 5:395037/149‑1 (MQ=255) tCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaa < 5:196442/148‑1 (MQ=255) cctgcAAAAAA‑GCTAATCGCTGCGTGCTAAACACATAACCCCGGGCTTGCCCGGGGTTTTTGATTTTGCCAAATTGGGCTCTTCTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaa < 1:120413/145‑1 (MQ=255) ccGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaac > 3:14199/1‑148 (MQ=255) cGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaacaa < 4:115196/149‑1 (MQ=255) tCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTTTAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGAGGAAGAAGTGATCGAACAACt > 6:171903/1‑149 (MQ=255) cAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGt > 2:64642/1‑120 (MQ=255) cAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGt < 1:64642/120‑1 (MQ=255) aaCA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGt > 5:235233/1‑149 (MQ=255) cA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGa < 7:72307/149‑1 (MQ=255) a‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGaa < 6:133368/149‑1 (MQ=255) cTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGc < 4:326214/149‑1 (MQ=255) tAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTCATCGAACAACTCCGTGAAGc > 3:194989/1‑148 (MQ=255) aaTCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATc < 3:76089/130‑1 (MQ=255) aaTCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATc > 4:76089/1‑130 (MQ=255) aTCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa > 6:57309/1‑149 (MQ=255) aTCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGa < 4:139651/148‑1 (MQ=255) aTCGCTGCGGGCTAAACACAGAAGCCCGGGCTTGCCCGGGGTTTTTGATTTTGCCAAAGTGGG‑‑GTACTAGGTTATAAGGCGCTGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa < 5:160512/149‑1 (MQ=255) tgtcttcGTGCTATAGACAGTACGCCTTGCTTGCCCGTGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTAATCTAGGTAAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa < 7:356405/142‑1 (MQ=255) cGTGCTAAACACAGAACCCCGGGGTTTCCCGGGGTTTTTGCTTTTTCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCTTGGAAGATGTGATCGAACAACTCCGTGAAGCGAATGAGCCg < 6:144280/149‑1 (MQ=255) cGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGc < 4:295990/147‑1 (MQ=255) cTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTAc < 8:341205/149‑1 (MQ=255) tAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaagaa > 1:212940/1‑111 (MQ=255) aaCACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaagaa < 7:99604/109‑1 (MQ=255) aaCACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCgg > 1:363383/1‑149 (MQ=255) acacAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGt < 4:364278/149‑1 (MQ=255) acaGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGc < 4:194989/149‑1 (MQ=255) aaaaaCCCCGGGCAAGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGa > 3:331758/4‑134 (MQ=255) aaaaaCCCCGGGCAAGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGa < 4:331758/131‑1 (MQ=255) aaCCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAg < 7:272568/124‑1 (MQ=255) aaCCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAg > 8:272568/1‑124 (MQ=255) ccccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 2:11110/1‑148 (MQ=255) ccccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 3:113875/1‑148 (MQ=255) ccccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 5:142399/1‑148 (MQ=255) ccccGGGCAAGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 7:280574/1‑148 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGtat > 5:177705/1‑51 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGtat > 5:171546/1‑51 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGtat < 6:177705/51‑1 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGtat < 6:171546/51‑1 (MQ=255) cGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGTCGGTACCGGTGCCCCTGGAGc < 6:122089/149‑1 (MQ=255) cGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGc > 4:1872/1‑149 (MQ=255) | GAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACA‑GCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGG‑‑CTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGCTTC > NC_002947/6103911‑6104199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |