| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 539,942 | C→A | 6.7% | P774T (CCG→ACG) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 539,942 | 0 | C | A | 6.7% | 339.5 / 9.8 | 105 | P774T (CCG→ACG) | rpoB | DNA‑directed RNA polymerase subunit beta |
| Reads supporting (aligned to +/- strand): ref base C (50/48); new base A (5/2); total (55/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.87e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
TGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCC > NC_002947/539803‑540089 | tgtgATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGGACGCTGGttg < 7:205796/149‑3 (MQ=255) tgATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGGACGCTGGttgat < 4:101818/149‑5 (MQ=255) gATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGc > 7:303991/1‑148 (MQ=255) tCGCCTCGGTCGACGCCAGCCTTTTGGTTGTTCGGGTTGCCGACTACTATGTTTAAACCGGCTATGGGGGTGTGTATATCTACAACCTGACAATGTACACCCGTTCTAACCATAACACCTGCATCAACCAGCGTCCGCTGGt < 8:178477/142‑1 (MQ=255) tCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGATCGCCTGCATCAACCAGCGTCCGCTGGTGAGCAAg > 6:17058/1‑149 (MQ=255) tCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTgggatcg > 7:178477/1‑143 (MQ=255) tCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCaa < 4:195178/148‑1 (MQ=255) tCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCACCCTCCGCTGGAGAGCAAg > 8:7024/1‑149 (MQ=255) taCTCGGTCGACGCAAGCCGTTTCGTTGTTCGCTTTGCCGACGACGAAGTGGAAACCGGCTAAGGGGGTGTGTAATTCTACAACGTGACAATGTACACCGGTTCGAACCATAACACGTGCATCAACCAGCGCCCGCTGGTTAGAAAgg < 8:303991/147‑1 (MQ=255) gACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACCCCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAggg > 4:231701/1‑149 (MQ=255) gACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAgg < 7:245564/148‑1 (MQ=255) gACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGCGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAgg < 1:376715/148‑1 (MQ=255) aCTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGt > 8:289462/1‑149 (MQ=255) aCTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGt > 6:116911/1‑149 (MQ=255) cTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGt < 2:168821/148‑1 (MQ=255) cTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGt > 8:167498/1‑148 (MQ=255) ggTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGa < 6:208095/147‑1 (MQ=255) ggTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGAc < 4:316866/148‑1 (MQ=255) ggTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGAc > 7:238522/1‑148 (MQ=255) ggTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGAc > 1:179553/1‑148 (MQ=255) ggTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGAc > 1:185617/1‑148 (MQ=255) tCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAg < 1:197870/149‑1 (MQ=255) gCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCa < 4:47907/149‑1 (MQ=255) cAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGc < 3:156623/149‑1 (MQ=255) aGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCg > 5:92399/1‑149 (MQ=255) ccGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCgtg < 8:238522/149‑1 (MQ=255) gTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCgtggt < 5:380368/149‑1 (MQ=255) gTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCgtggt < 2:185617/149‑1 (MQ=255) gTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCgtggt < 2:179553/149‑1 (MQ=255) tCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGa < 7:289462/148‑1 (MQ=255) gttgttCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAc‑a > 8:184845/1‑148 (MQ=255) tgttCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCATGGGTGACAAGGTTCAGCGTGGTGAc‑atca > 5:178520/1‑149 (MQ=255) gttCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCaa < 7:269499/119‑1 (MQ=255) gttCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCaa > 8:269499/1‑119 (MQ=255) gttCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAc‑atcat > 8:299984/1‑149 (MQ=255) gcgTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGcc > 5:190590/1‑149 (MQ=255) gTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCgt < 7:299984/149‑2 (MQ=255) ttGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGAc > 8:83362/1‑149 (MQ=255) ccGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGc < 4:34806/149‑1 (MQ=255) cgacgacgaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGc < 7:184845/148‑1 (MQ=255) gacgaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTc > 5:345977/1‑149 (MQ=255) acgaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTcc < 2:167864/149‑1 (MQ=255) gaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCgtggt > 8:5884/1‑123 (MQ=255) gaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCgtggt < 7:5884/123‑1 (MQ=255) gaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCAc > 7:374649/1‑149 (MQ=255) gaAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCAc > 8:31307/1‑149 (MQ=255) aaaCCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATg < 5:116911/149‑1 (MQ=255) aaCCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATgg < 6:311209/149‑1 (MQ=255) gCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAg > 6:328624/1‑149 (MQ=255) gAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCt > 2:91956/1‑149 (MQ=255) ggTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGATCGCCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGctct < 5:17058/149‑1 (MQ=255) tgtgGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTgg < 7:167498/149‑1 (MQ=255) ggATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt > 3:1283/1‑148 (MQ=255) gATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt > 2:32272/1‑147 (MQ=255) gATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCa > 1:273729/1‑149 (MQ=255) atatCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt > 6:296623/1‑146 (MQ=255) atatCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGt > 1:310525/1‑146 (MQ=255) cTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACa > 6:1747/1‑149 (MQ=255) tACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACAt > 3:76681/1‑149 (MQ=255) tACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACAt > 5:61075/1‑149 (MQ=255) aCAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATg > 7:111387/1‑149 (MQ=255) aCAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATg > 6:159858/1‑149 (MQ=255) aCAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATg > 3:7795/1‑149 (MQ=255) cAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATgc < 2:310525/149‑1 (MQ=255) cAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATgc < 8:374649/149‑1 (MQ=255) aaCCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATgcg < 6:92399/149‑1 (MQ=255) aaCCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATgcg > 2:262202/1‑149 (MQ=255) tGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATc > 8:271677/1‑149 (MQ=255) aCCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATc < 5:1747/147‑1 (MQ=255) cgatgtacCCGTTGGAACCAGATCACCTGCATCAACCAGCGTCGGCTGGTGAGCAAGTGTGACATGGTTCAGCGTGGTGAC‑ATCTTGGCCGACGGCCCTTCCAGCGACATTGGTGAGCTGGCTCTGTGTCAGAACATGCGCATCGCGtt < 8:25735/143‑1 (MQ=255) gaacacCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCa > 7:112101/3‑149 (MQ=255) cacCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATg < 6:345977/148‑1 (MQ=255) cccGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGtt > 7:25735/1‑142 (MQ=255) ccGTTCGAACCAGAACACCTGCATCAACCAGCTTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCGCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATgc < 5:418113/131‑1 (MQ=255) ccGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTTACAAGGTTCAGCGTGGTGAC‑ATCAAGGCCGACGGCCCGTCCACCGACATGGGTCAGCTGGCTATGCGTCAGAACATgc > 6:418113/1‑131 (MQ=255) ccGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGt > 4:107546/1‑149 (MQ=255) cGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGaa < 3:107546/148‑1 (MQ=255) aCCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGc < 1:91956/149‑1 (MQ=255) aCCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGc < 7:271677/149‑1 (MQ=255) ccAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGc < 7:92895/148‑1 (MQ=255) acacCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAAc < 7:31307/149‑1 (MQ=255) cATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGaa < 4:7795/148‑1 (MQ=255) cATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGa < 8:111387/147‑1 (MQ=255) cATCAACCAGCCTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGaa < 8:186963/148‑1 (MQ=255) aTCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGa > 6:147854/1‑149 (MQ=255) tCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGAc < 3:231701/149‑1 (MQ=255) tcaCCAGCGGATGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACt > 8:63575/3‑149 (MQ=255) tcaCCAGCGGACGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACt > 1:151370/3‑149 (MQ=255) tcaCCAGCGGACGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACt > 6:87280/3‑149 (MQ=255) tcaCCAGCGGACGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCT‑GGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTc > 6:240871/3‑149 (MQ=255) tcaCCAGCGGACGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCAGTCCACCGACATGGGTGAGCTGGCTATGGGTCAGCACATGCGCATCGCGTTCATGGCGTTGAACGGCTTCAACTTCGAAGaat > 6:111873/3‑147 (MQ=255) aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCt > 7:81997/1‑132 (MQ=255) aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCt < 8:81997/132‑1 (MQ=255) aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGaa > 6:34008/1‑143 (MQ=255) aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGaa < 5:34008/143‑1 (MQ=255) aCCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTcc < 5:147854/149‑1 (MQ=255) ccAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGACGAACATGGCCGACGGCCCGTCCACCGACATGGGTGCGGTGGCTGGGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTc > 1:293197/1‑148 (MQ=255) cAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCAt > 1:390409/1‑149 (MQ=255) cAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCAt > 2:217129/1‑149 (MQ=255) tCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGcc > 5:281086/1‑149 (MQ=255) | TGTGATCGACTCGGTCGACGCCAGCCGTATCGTTGTTCGCGTTGCCGACGACGAAGTGGAAACCGGCGAAGCGGGTGTGGATATCTACAACCTGACCAAGTACACCCGTTCGAACCAGAACACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACAAGGTTCAGCGTGGTGAC‑ATCATGGCCGACGGCCCGTCCACCGACATGGGTGAGCTGGCTCTGGGTCAGAACATGCGCATCGCGTTCATGGCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCC > NC_002947/539803‑540089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |