Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 644,546 | C→G | 11.1% | E157D (GAG→GAC) | acoA ← | acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 644,546 | 0 | C | G | 11.1% | 149.8 / 8.3 | 54 | E157D (GAG→GAC) | acoA | acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha |
Reads supporting (aligned to +/- strand): ref base C (25/23); new base G (4/2); total (29/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
GTGACGCCTGGCATGCCGAAGCCGGCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGCATGCCCTTT > NC_002947/644400‑644693 | gTGACGCCTGGCATGCCGAAGCCGGCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTc < 3:382905/149‑1 (MQ=255) gACGCCTGGCATGCCGAAGCCGGCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCg > 3:128701/1‑148 (MQ=255) aCGCCTGGCATGCCGAAGCCGGCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGaa < 3:282838/149‑1 (MQ=255) cTGGCATGCCGAAGCCGGCAGCGCGGTCGGCAATGTGGGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATAc > 1:72207/1‑149 (MQ=255) gAAGCCGGCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGt > 8:182240/1‑149 (MQ=255) aaGCCGGCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGtt < 2:72207/149‑1 (MQ=255) gCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGc < 2:213916/149‑1 (MQ=255) gCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCg > 2:294299/1‑147 (MQ=255) cAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCg > 5:400166/1‑146 (MQ=255) tgt‑gGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGaagaag < 7:182240/149‑1 (MQ=255) gt‑gGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAgg > 1:261769/1‑149 (MQ=255) gTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTa < 3:255479/149‑1 (MQ=255) tCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTAc < 4:128701/149‑1 (MQ=255) aGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCCCGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGac < 5:415151/149‑1 (MQ=255) tACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGt > 1:368289/1‑149 (MQ=255) ttGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTAcc < 1:92055/132‑1 (MQ=255) ttGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTAcc > 2:92055/1‑132 (MQ=255) ggAGGCAGTGGCCGCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGccc < 3:5491/148‑1 (MQ=255) gAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGCTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCtt < 1:342384/149‑1 (MQ=255) aGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCt > 1:284241/1‑149 (MQ=255) aGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCt > 3:77462/1‑149 (MQ=255) ccTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGgcc > 2:138458/1‑149 (MQ=255) gCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGcgccg > 1:246726/1‑149 (MQ=255) cGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGCAGGCTCCCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCgccgcc > 8:151052/1‑149 (MQ=255) gttCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCg < 4:77462/148‑1 (MQ=255) ggCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGgccgcc > 3:308048/1‑130 (MQ=255) ggCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGgccgcc < 4:308048/130‑1 (MQ=255) ggCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGc‑cac > 5:290710/1‑147 (MQ=255) ggCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGc‑cac < 6:400166/147‑1 (MQ=255) gCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAg < 1:138458/149‑1 (MQ=255) cGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAgtggt < 2:284241/149‑1 (MQ=255) tGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCATCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTgcgccg > 2:299869/1‑149 (MQ=255) gcagggcaggTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTgcgccgg > 2:406309/1‑149 (MQ=255) cagggcaggTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCGCTTGAGCTTGGCCGCCAGCGCCGCCCCGGCGCACCACTGGtg‑gccgg < 1:294299/148‑1 (MQ=255) caggTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCcga > 8:130077/1‑149 (MQ=255) gTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCgaa < 3:57781/66‑1 (MQ=255) gTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCgaa > 4:57781/1‑66 (MQ=255) gTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCcgacga < 1:299869/149‑1 (MQ=255) cgtattCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATAc > 6:146871/6‑149 (MQ=255) cATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATAc > 6:56454/1‑149 (MQ=255) aTGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAATGAGGCTTCCGCCAAGTCATCGCCGCCCATGAGCATGGCCGCCCGCCCCGCCCCGGC‑CACCAGTTGTGCGCCGGCGCCGACGAttac > 1:319587/1‑146 (MQ=255) gATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGt > 5:76693/1‑149 (MQ=255) ttCGAGGCCATGAACATGGCGTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGAGCGCCGGCGCCGACGATACCGtt > 4:49134/2‑149 (MQ=255) tCGAGGCCATGAACATGGCGTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCCACGATACCGTTg > 7:17452/1‑149 (MQ=255) cGAGGCCATGAACATGGCGTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTgcgccgg > 7:125589/1‑131 (MQ=255) cGAGGCCATGAACATGGCGTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTgcgccgg < 8:125589/131‑1 (MQ=255) aggCCATGAACATGGCGTCGAATACGGCGCCCTCGTTGGATGCCCCGATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGc > 1:293672/3‑149 (MQ=255) cATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCAcc > 6:388256/1‑147 (MQ=255) cATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGa < 7:130077/149‑1 (MQ=255) tgaacATGGCGTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGc < 3:49134/145‑1 (MQ=255) tGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGc < 1:173749/149‑1 (MQ=255) tttctgggCCTCTATTACGCCGCCCGGGTGGTTTGCCCC‑TTCGCGTACTATGGCTACCCACCCGTAATCGGGGCCCTTTCGGTTGGCGGCATGGGCGGCCCGGGC‑AACCTGGGGGGGGCGGGGGCCGACGATACCGTTGGCACCGAGc < 2:368289/142‑1 (MQ=255) gTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGCa > 5:336396/1‑149 (MQ=255) gCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGCATGCCCt < 1:406309/148‑1 (MQ=255) ccTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGCATGCCCttt > 3:36723/1‑149 (MQ=255) ccTCGAATACGGCGCCCTCGTGGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGCATGCCCttt < 6:260938/149‑1 (MQ=255) cTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTg > 6:76416/1‑130 (MQ=255) cTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTg < 5:76416/130‑1 (MQ=255) | GTGACGCCTGGCATGCCGAAGCCGGCAGCGCGGTCGGCAATGT‑GGTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCC‑ATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTTGGCCGCCAGCGCCGCCCCGGC‑CACCAGTGGTGCGCCGGCGCCGACGATACCGTTGGCACCGAGCATGCCCTTT > NC_002947/644400‑644693 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |