| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,094,125 | G→T | 7.3% | L14L (CTC→CTA) ‡ | ptsN ← | phosphotransferase system subunit IIA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,094,125 | 0 | G | T | 7.3% | 241.6 / 6.3 | 76 | L14L (CTC→CTA) ‡ | ptsN | phosphotransferase system subunit IIA |
| Reads supporting (aligned to +/- strand): ref base G (35/35); new base T (2/4); total (37/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
CCATTGCCGAAACCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCGTCGATCGCTG > NC_002947/1093979‑1094273 | ccATTGCCGAAACCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGa < 7:217459/148‑1 (MQ=255)ccATTGCCGAAACCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAg > 6:157864/1‑149 (MQ=255) aTTGCCGAAACCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAgg > 4:380824/1‑148 (MQ=255) ttGCCGAAACCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAggg > 7:121750/1‑148 (MQ=255) tGCCGAAACCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGaa > 5:60460/1‑149 (MQ=255) aaaCCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑Gcc < 8:313490/149‑1 (MQ=255) cGGTATAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGC‑CGTTCCCTCGTGAACGTGCCggga < 8:362220/149‑2 (MQ=255) gAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAg < 6:60460/149‑1 (MQ=255) ccGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGAt > 4:233614/1‑149 (MQ=255) cGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATg > 3:330163/1‑149 (MQ=255) cGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATg < 1:331111/149‑1 (MQ=255) cGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGC‑CGTTCCCTCGTGAACGTGCCggg > 4:281506/1‑139 (MQ=255) cGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGC‑CGTTCCCTCGTGAACGTGCCggg < 3:281506/139‑1 (MQ=255) ttCCCCGGCTACCAGCTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCTCTTGTCGCCGTCGGCGATTACCCCTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGAt < 1:125922/147‑1 (MQ=255) tCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCaa < 3:275227/148‑1 (MQ=255) cccGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGCAACG‑GCCGGGGGTCAGGATGGTTTCAAg < 1:227657/148‑1 (MQ=255) ccGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTc < 3:380824/149‑1 (MQ=255) cGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTc > 1:366302/1‑143 (MQ=255) cGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTc < 2:366302/143‑1 (MQ=255) tACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCa > 3:169659/1‑149 (MQ=255) tACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCa > 1:240326/1‑149 (MQ=255) tttttCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATg < 2:189986/149‑1 (MQ=255) tctaattcGTCCTGGATCTCCAGTTCTGGCTCCTG‑‑‑‑‑GTCGGAGTTGA‑CAGTGCCTACCTTATGCTGGGCTCGCTTGTGGCTGCATCCCTTCACGTTCACGAGGGAACG‑GCGGGGGGGCTGTAAGGTTTCAAGTCCGATGATGGATCA‑gg < 2:69320/141‑1 (MQ=255) cGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑gg‑g < 4:45838/148‑1 (MQ=255) gAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑gg‑gg > 8:27152/1‑148 (MQ=255) gAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑gg‑gg > 5:148390/1‑148 (MQ=255) gAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑gg‑gg > 4:40781/1‑148 (MQ=255) gAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCCCCCGGC‑CGTTCCCTCGTGAACGTGCCggga < 3:151440/112‑2 (MQ=37) gAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCCCCCGGC‑CGTTCCCTCGTGAACGTGCCggga > 4:151440/1‑111 (MQ=37) gACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGAt > 2:120995/1‑148 (MQ=255) gACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGAt > 3:309328/1‑148 (MQ=255) gTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGc > 1:246156/1‑149 (MQ=255) tCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCg > 1:6322/1‑149 (MQ=255) tCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCg > 1:269458/1‑149 (MQ=255) gCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTTACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCACGTCGGATCATGGATGA‑GG‑GGGATCAGCggg > 6:282641/1‑147 (MQ=255) aTCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGc > 5:211379/1‑149 (MQ=255) ccAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCa > 4:240019/1‑149 (MQ=255) cAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCa < 8:186906/148‑1 (MQ=255) cTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGACGG‑GGGATCAGCGGGCAGCTGCACCtt < 1:210876/148‑1 (MQ=255) gCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTgcagc < 4:309328/149‑1 (MQ=255) gCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTgcag < 2:385/148‑1 (MQ=255) aCTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGcagcag > 6:142728/1‑149 (MQ=255) ttG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAg < 3:129771/131‑1 (MQ=255) ttG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAg > 4:129771/1‑131 (MQ=255) tCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTg < 2:269458/149‑1 (MQ=255) tCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTg > 6:381760/1‑149 (MQ=255) gA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAg > 6:80726/1‑119 (MQ=255) gA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAg < 5:80726/119‑1 (MQ=255) a‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTc < 3:240019/149‑1 (MQ=255) gTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCtt < 4:330163/149‑1 (MQ=255) gTGGCGACCGTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTTACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGTATCATTGTTGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCtt < 5:282641/149‑1 (MQ=255) aCCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGttt > 4:37815/1‑149 (MQ=255) ccTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGtttt < 2:240326/149‑1 (MQ=255) tCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCa < 3:40781/148‑1 (MQ=255) cAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGtt < 3:37815/149‑1 (MQ=255) aGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCAGTAGGTAACG‑GCGGGGGGTAAGTATGGTTTCAAGTCGTATCTTGGATTT‑GGACGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGtt < 1:120995/149‑1 (MQ=255) aGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGtttt < 4:46740/129‑1 (MQ=255) aGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGtttt > 3:46740/1‑129 (MQ=255) aGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGtt > 5:314365/1‑148 (MQ=255) aGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGtt < 6:314365/148‑1 (MQ=255) ggtcgcgcTGCTTGCTGCCTCCCGGCACGTGCCCGAGGGAACG‑GCCGGGGGGCAGGAGGGGTTCAAGTCGGATCATGGCTGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTgg < 4:210505/146‑1 (MQ=255) gcTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTc > 2:84884/1‑148 (MQ=255) cttGCTGCCTCCCGGCACGTTCACGATGGAACG‑GCCGTGGGTCAGGATGGTTTCAAGTCGGATCATGTATGA‑GG‑GGGATCAGCGGGCATCTGCACCTTGCAGCAGTCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTctatc < 4:169659/148‑5 (MQ=255) gctgcCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTgcagc > 2:363671/1‑100 (MQ=255) gctgcCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTgcagc < 1:363671/100‑1 (MQ=255) ccTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCg < 5:157864/147‑1 (MQ=255) ccTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGc < 2:246156/149‑1 (MQ=255) tCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGcc > 6:324488/1‑148 (MQ=255) tCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGcc > 3:357362/1‑148 (MQ=255) ccGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAg < 6:148390/149‑1 (MQ=255) ccGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAg > 1:160178/1‑149 (MQ=255) cGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAgg > 8:197832/1‑149 (MQ=255) gCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCg > 1:327648/1‑149 (MQ=255) cACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCGt < 8:121750/149‑1 (MQ=255) aCGAGGGAACG‑GCCGGGGGACAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCGTCGATCGc > 3:281303/1‑149 (MQ=255) cGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCGTCGATCGCt < 5:142544/149‑1 (MQ=255) gAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCGTCGATCGCTg > 5:86011/1‑149 (MQ=255) gAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCGTCGATCGCTg > 8:40066/1‑149 (MQ=255) | CCATTGCCGAAACCGGTAGAACCGAGCTTTTCCCGGGCTACCAGTTTTTCGAAGACGTCCTGCATCTCCAGTTCTGGCACTTG‑‑‑‑‑GTCGGCGATGA‑CAGTGGCGACCTTTTCCAGGGCGCGCTTCTTGCTGCCTCCCGGCACGTTCACGAGGGAACG‑GCCGGGGGTCAGGATGGTTTCAAGTCGGATCATGGATGA‑GG‑GGGATCAGCGGGCAGCTGCACCTTGCAGCAGGCTTTGCTGTTTTTCCTTGTGTTTTTTCAGTTGGCGGTCGAGCTTGTCGGCCAAGGCGTCGATCGCTG > NC_002947/1093979‑1094273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |