| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,313,636 | G→C | 5.3% | R341G (CGC→GGC) | rapA ← | RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,313,636 | 0 | G | C | 5.3% | 232.0 / 3.4 | 75 | R341G (CGC→GGC) | rapA | RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base G (34/36); new base C (2/2); total (36/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.73e-01 | |||||||||||
TCGCCGTCGCTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGACCAGGCCGTATTCGGC > NC_002947/1313488‑1313783 | tCGCCGTCGCTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGcgcg < 1:91813/149‑1 (MQ=255) gCCGTCGCTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCgg < 1:193855/148‑1 (MQ=255) cGCTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCACAGCATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGACGAGCAGTTCCTGCACCGCCTCGGCTACAGGGCCGAACTGCACGCTTTCGGCGCGGAAAGCg > 2:386268/1‑149 (MQ=255) cTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGc > 5:382092/1‑149 (MQ=255) cTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCCGCGCCGAAAGCgag < 1:156590/149‑3 (MQ=255) cTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCCGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGc > 7:220332/1‑149 (MQ=255) tGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCCAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGcc > 1:344700/1‑149 (MQ=255) cTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCg > 1:276145/1‑149 (MQ=255) ccAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTg > 5:20484/1‑148 (MQ=255) agcagGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGaa > 6:129272/1‑148 (MQ=255) ggCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGt < 7:210402/149‑1 (MQ=255) gCTTCGCCGTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGtt < 6:219383/149‑1 (MQ=255) cTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTg < 3:205918/149‑1 (MQ=255) cTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTc > 2:91840/1‑148 (MQ=255) cGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGa < 8:301190/147‑1 (MQ=255) cGGCACCCAGGAAGCCCAGGAGGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGa < 6:70938/147‑1 (MQ=255) ggCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAg > 3:46663/1‑147 (MQ=255) cACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGGGAAAACGGTTGGGGTCGAGTAgg > 1:156722/1‑149 (MQ=255) aCCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGtt > 4:315920/1‑135 (MQ=255) aCCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGtt < 3:315920/135‑1 (MQ=255) aCCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGgc > 4:85818/1‑149 (MQ=255) aCCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGgc > 4:151351/1‑149 (MQ=255) cccAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGa < 4:304243/142‑1 (MQ=255) cccAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGa > 3:304243/1‑142 (MQ=255) cAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGgcg > 2:281129/1‑147 (MQ=255) aaGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCTCCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTTGGGTCGAGTAGGCGCAggcg < 8:219390/149‑1 (MQ=255) cccAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTTGGCGCAggcgggc < 8:317682/149‑1 (MQ=255) ccAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAggcgggc > 7:49761/1‑148 (MQ=255) tggtggCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTgg < 5:129272/149‑1 (MQ=255) tggCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTg > 8:170935/1‑149 (MQ=255) cGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGATAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTcc < 1:386268/149‑1 (MQ=255) gTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCt < 6:382092/149‑1 (MQ=255) ccTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTggg > 5:108955/1‑109 (MQ=255) ccTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTggg < 6:108955/109‑1 (MQ=255) cTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGcc > 6:299599/1‑147 (MQ=255) cTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCa < 7:290949/149‑1 (MQ=255) cGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCCGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAgctgct < 8:220332/149‑1 (MQ=255) cccaaggCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGGCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCgg < 6:313317/144‑1 (MQ=255) cAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCACCGCTACCGGGCGGTACTCCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCCCAGGCGGGCGAAGTCGCTGTCCTGGCCCAGCAGCTCgg > 4:360660/1‑149 (MQ=255) aGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCggg > 4:167597/1‑149 (MQ=255) gACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCgggg < 1:281129/149‑1 (MQ=255) aCGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCgg > 3:295599/1‑146 (MQ=255) aCGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCgg < 4:295599/146‑1 (MQ=255) ggCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTg < 2:276145/149‑1 (MQ=255) ccTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGGGGTAGTGCTCGGTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAgc < 4:213286/134‑1 (MQ=255) ccTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCg > 5:824/1‑149 (MQ=255) ccTCGTCGAGCAGTTCCTGCACCGCCTCGCCAACCGGGAGGTAGTCCTCGCTTTCGGCGCGGAAACCGGCCACGACGTCAAAACGGTTGGGGTCCAGAAGGCGCAGGCGCGCGAACTGGCTGTCCAGTACCAgc > 3:213286/1‑134 (MQ=255) ccTCGTCGAGCAGGTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCg < 4:46663/149‑1 (MQ=255) gtcgAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCTGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCa < 2:344700/149‑1 (MQ=255) cgAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTc < 3:167653/88‑1 (MQ=255) cgAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTc > 4:167653/1‑88 (MQ=255) cAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCaa > 5:78014/1‑147 (MQ=255) cAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACa < 1:128606/149‑1 (MQ=255) ccTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACg > 3:171606/1‑149 (MQ=255) tGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGcc > 1:296766/1‑149 (MQ=255) tGCACCGCCTCGGCTACCGGGCGGTAGTGCTAGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGcc > 1:191752/1‑149 (MQ=255) gCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGccc > 1:317508/1‑149 (MQ=255) cACCGCCTCGGCTACCGGGCTGTAGTGCTCGCTTTCGGCGCGGAAAGCTGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGTTCAGCAACAGTACGccc < 2:191752/148‑1 (MQ=255) cACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTgg < 7:275298/128‑1 (MQ=255) cACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTgg > 8:275298/1‑128 (MQ=255) aCCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCggggg < 8:125270/124‑1 (MQ=255) aCCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCggggg > 7:125270/1‑124 (MQ=255) ccGCCTCGGCTACCTGGCGGTAGTGCTCGCTTTCGGCGCGGAATGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGa < 3:360660/149‑1 (MQ=255) ccGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGa < 3:167597/149‑1 (MQ=255) cTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTgg < 4:171606/149‑1 (MQ=255) cTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTgg < 5:299599/149‑1 (MQ=255) ggCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGt > 6:200321/1‑149 (MQ=255) tAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTc < 3:151351/149‑1 (MQ=255) aGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTc < 2:156722/148‑1 (MQ=255) gTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCg < 8:49761/148‑1 (MQ=255) tGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGAc < 2:317508/149‑1 (MQ=255) tCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGACCAg > 2:251397/1‑149 (MQ=255) ccGCTTTCCGCGCCGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGACCAg > 8:284349/2‑149 (MQ=255) cGCTTTCCGCGCCGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACa < 4:43974/111‑1 (MQ=255) cGCTTTCCGCGCCGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACa > 3:43974/1‑111 (MQ=255) gCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTg < 1:161409/129‑1 (MQ=255) cTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGACCAGGcc < 1:251397/149‑1 (MQ=255) cgcgGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGGCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGACCAGGCCGTATTCg < 2:49920/149‑1 (MQ=255) cgGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGACCAGGCCGTATTCGgc < 6:78014/149‑1 (MQ=255) | TCGCCGTCGCTGACCGCTGCCAGCAGGGCTTCGCCTTCGGCACCCAGGAAGCCCAGGATGGTGGCGTGGGCCTTGGGCGACAGACGGCCCTCGTCGAGCAGTTCCTGCACCGCCTCGGCTACCGGGCGGTAGTGCTCGCTTTCGGCGCGGAAAGCGGCCAGGTCGTGAAAACGGTTGGGGTCGAGTAGGCGCAGGCGGGCGAAGTGGCTGTCCTGGCCCAGCTGCTCGGGGGTGGCGGTCAGCAACAGTACGCCCGGAATCACTTGGGCCAGTTGCTCGACCAGGCCGTATTCGGC > NC_002947/1313488‑1313783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |