Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,401,650 | T→C | 6.5% | R215R (CGT→CGC) | queE → | 7‑carboxy‑7‑deazaguanine synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,401,650 | 0 | T | C | 6.5% | 176.9 / 2.8 | 61 | R215R (CGT→CGC) | queE | 7‑carboxy‑7‑deazaguanine synthase |
Reads supporting (aligned to +/- strand): ref base T (32/25); new base C (2/2); total (34/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 |
GCCGAGCGTGCCGGTGAGGTGTTGTTCTCACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGCTTCGACTACGGCCA > NC_002947/1401504‑1401786 | gCCGAGCGTGCCGGTGAGGTGTTGTTCTCACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGtt < 2:194978/148‑1 (MQ=255) gCGTGCCGGTGAGGTGTTGTTCTCACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGttgatt > 7:6600/1‑147 (MQ=255) aGGTGTTGTTCTCACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTa > 5:370159/1‑148 (MQ=255) gttCTCACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACACCCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGa > 4:331475/1‑148 (MQ=255) tcACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTgag > 1:116850/1‑128 (MQ=255) tcACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTgag < 2:116850/128‑1 (MQ=255) tcACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGa > 3:312532/1‑148 (MQ=255) aCCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGaaa > 3:211243/1‑148 (MQ=255) aCCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGaaa > 2:332258/1‑148 (MQ=255) ccAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGTAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACa < 6:114772/142‑1 (MQ=255) ccAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGTAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACa > 5:114772/1‑142 (MQ=255) ccAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAAc < 4:211243/149‑1 (MQ=255) aGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAAcgc < 8:6600/149‑1 (MQ=255) atcatcAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCGTGTACGCTTCCAACTGCAGATGAACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAg > 8:297996/1‑149 (MQ=255) atcatcAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGCTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAg > 1:16186/1‑149 (MQ=255) atcatcAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGCTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAg > 1:22546/1‑149 (MQ=255) gTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCtg > 1:321703/1‑149 (MQ=255) tGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCtgt > 5:121449/1‑149 (MQ=255) cAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCcgg > 1:365516/1‑149 (MQ=255) cAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCcgg > 3:310721/1‑149 (MQ=255) gTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCcggcg > 2:246738/1‑149 (MQ=255) gTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCcggcg > 3:324018/1‑149 (MQ=255) cTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTgagga > 3:193168/1‑97 (MQ=255) cTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTgagga < 4:193168/97‑1 (MQ=255) gCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTgg < 7:240450/147‑1 (MQ=255) gCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGAt < 6:199534/149‑1 (MQ=255) tGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTc > 2:239795/1‑149 (MQ=255) aCTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCg < 1:239795/148‑1 (MQ=255) aCTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGCTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCg < 2:16186/148‑1 (MQ=255) aCTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGCTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCg < 2:22546/148‑1 (MQ=255) cTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGc < 1:189228/149‑1 (MQ=255) tGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGc < 6:99584/90‑1 (MQ=255) tGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGc > 5:99584/1‑90 (MQ=255) tGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCtgtt < 2:380785/127‑1 (MQ=255) tGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCtgtt > 1:380785/1‑127 (MQ=255) gATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCAc > 2:216051/1‑149 (MQ=255) aTCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCAcc > 6:214773/1‑149 (MQ=255) gTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGCAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTg < 1:332258/149‑1 (MQ=255) ttGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGGCTGGATTCGGCCACCGTgg < 6:121449/149‑1 (MQ=255) ttGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTgg < 6:370159/149‑1 (MQ=255) cTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTg < 4:324018/149‑1 (MQ=255) cTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTg > 3:291421/1‑149 (MQ=255) aCCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATgg < 4:291421/149‑1 (MQ=255) cctgTACGCTTCCTACTGCAGCTGCTCAAGTTGCTTTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATTACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCAGCGTGGTTGCCATGGCCAAg < 4:310721/149‑1 (MQ=255) cctgTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCaa < 2:365516/148‑1 (MQ=255) tgTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGc > 7:326204/1‑149 (MQ=255) tgTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGc > 2:26298/1‑149 (MQ=255) cGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGaa < 5:400074/149‑1 (MQ=255) cGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGaa < 4:312532/149‑1 (MQ=255) ttCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGc > 4:265771/1‑149 (MQ=255) ccAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCt < 5:214773/148‑1 (MQ=255) aaCTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTGGCCATGGCCAAGGCCGAAGGCTa > 6:268870/1‑147 (MQ=255) tGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAgct > 2:196773/1‑149 (MQ=255) gCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAgctg > 8:383651/1‑149 (MQ=255) aGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCg < 6:27843/106‑1 (MQ=255) aGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCg > 5:27843/1‑106 (MQ=255) cacaAGTTGCTGTGGAACGACGAGCCCGGACGTTGAATGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACAcc < 3:331475/149‑1 (MQ=255) ttGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGTGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGc > 1:65962/1‑149 (MQ=255) gtgGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGCTTCGa > 7:193355/1‑149 (MQ=255) gAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGCTTCGACTa > 2:252189/1‑149 (MQ=255) aaCGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGCTTCGACTAc < 1:246738/149‑1 (MQ=255) aaCGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGCTTCGACTAc < 1:216051/149‑1 (MQ=255) cgaGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGCTTCGACTACGGCCa > 8:363704/1‑149 (MQ=255) | GCCGAGCGTGCCGGTGAGGTGTTGTTCTCACCCAGCCATCATCAGGTGAACGCCAGTGACCTGGCTGACTGGATCGTTGCTGACAACCTGCCTGTACGCTTCCAACTGCAGCTGCACAAGTTGCTGTGGAACGACGAGCCCGGACGTTGATTGAGGAGCACGTACACATGACAGAAAAACGCGCAGTAATCCTGTTGTCCGGCGGCCTGGATTCGGCCACCGTGGTTGCCATGGCCAAGGCCGAAGGCTACAGCTGCTACACCATGAGCTTCGACTACGGCCA > NC_002947/1401504‑1401786 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |