Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 158,997 G→T 6.1% Y464* (TAC→TAA PP_0149 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947158,9970GT 6.1% 212.6 / 3.3 66Y464* (TAC→TAAPP_0149hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (35/27);  new base T (2/2);  total (37/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.89e-01

GTGCGCAGGTCAGCCTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTGCGCAGCAGCTT  >  NC_002947/158851‑159143
                                                                                                                                                  |                                                                                                                                                  
gTGCGCAGGTCAGCCTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCgg                                                                                                                                                    <  3:371134/147‑1 (MQ=255)
gTGCGCAGGTCAGCCTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCgg                                                                                                                                                    <  4:229305/147‑1 (MQ=255)
  gcgcAGGTCAGCCTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGc                                                                                                                                                >  6:310451/1‑149 (MQ=255)
     cAGGGCAGCCTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTTGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCa                                                                                                                                             <  1:294523/149‑1 (MQ=255)
       ggTCAGCCTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAgg                                                                                                                                           <  2:134743/149‑1 (MQ=255)
              cTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACg                                                                                                                                    >  6:186310/1‑149 (MQ=255)
                  gCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTc                                                                                                                                <  5:144502/149‑1 (MQ=255)
                   cGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGTTACGCCTGGGCTACCGCTTcg                                                                                                                               <  4:399324/149‑1 (MQ=255)
                               ggCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATc                                                                                                                    >  3:113531/1‑148 (MQ=255)
                                  gctgctCGGCATTGAGGTCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTGAGCACCTCGAACATGGCCTGGTACCGGTCTCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGc                                                                                                                <  5:285208/149‑1 (MQ=255)
                                    tgctCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGTTACGCCTGGGCTACCGCTTcga                                                                                                                              >  6:69347/1‑132 (MQ=255)
                                    tgctCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGTTACGCCTGGGCTACCGCTTcga                                                                                                                              <  5:69347/133‑2 (MQ=255)
                                     gctCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTAACGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCAc                                                                                                              >  3:240617/1‑148 (MQ=255)
                                         ggCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTg                                                                                                          <  3:268835/148‑1 (MQ=255)
                                              tGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAg                                                                                                                                            >  5:110165/1‑109 (MQ=255)
                                              tGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAg                                                                                                                                            <  6:110165/109‑1 (MQ=255)
                                                  ggCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGc                                                                                                  >  1:118532/1‑147 (MQ=255)
                                                  ggCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCa                                                                                                <  8:8304/149‑1 (MQ=255)
                                                   gccagccaGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCt                                                                                                           >  8:369444/1‑137 (MQ=255)
                                                   gccagccaGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCt                                                                                                           <  7:369444/137‑1 (MQ=255)
                                                        ccagTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTcccc                                                                                          >  5:63925/1‑149 (MQ=255)
                                                          agTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTg                                                                                        <  6:63925/149‑1 (MQ=255)
                                                            tCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGcc                                                                                      <  5:310451/149‑1 (MQ=255)
                                                              ttCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCt                                                                                    >  4:109439/1‑149 (MQ=255)
                                                                 aaCCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCAGCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGa                                                                                 <  4:369247/149‑1 (MQ=255)
                                                                 aaCCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGa                                                                                 <  3:109439/149‑1 (MQ=255)
                                                                    cAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCa                                                                              >  3:24187/1‑149 (MQ=255)
                                                                     agagCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCAc                                                                             <  4:113531/149‑1 (MQ=255)
                                                                       agCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACgg                                                                           >  5:402625/1‑149 (MQ=255)
                                                                         cttgcttgATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGc                                                                          >  6:313701/1‑148 (MQ=255)
                                                                              ttgATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTg                                                                                                   <  1:55562/118‑1 (MQ=255)
                                                                              ttgATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTg                                                                                                   >  2:55562/1‑118 (MQ=255)
                                                                              ttgATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAAACGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCa                                                                     >  1:116675/1‑148 (MQ=255)
                                                                                  ttGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGTAAACCg                                                                >  6:146712/1‑149 (MQ=255)
                                                                                     ggaaCTGCCTTCTCCCCCCCTCGCACATGGCCGGGTACCGGTCCCCGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTg                                                             <  3:26047/147‑1 (MQ=255)
                                                                                     gTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTg                                                             >  5:154628/1‑149 (MQ=255)
                                                                                          tGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCat                                                        >  7:100006/1‑149 (MQ=255)
                                                                                            cTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCatga                                                      <  8:57030/149‑1 (MQ=255)
                                                                                            cTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCatga                                                      >  6:390155/1‑149 (MQ=255)
                                                                                            cTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCatg                                                       <  6:402625/148‑1 (MQ=255)
                                                                                                ctcAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGcc                                                                         <  1:21323/126‑1 (MQ=255)
                                                                                                ctcAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGcc                                                                         >  2:21323/1‑126 (MQ=255)
                                                                                                ctcAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCt                                                  >  5:411446/1‑149 (MQ=255)
                                                                                                    gCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTc                                               >  6:92395/1‑148 (MQ=255)
                                                                                                        cTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGt                                          >  1:156265/1‑149 (MQ=255)
                                                                                                            aaCATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGa                                                                                 >  8:161209/1‑106 (MQ=255)
                                                                                                            aaCATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGa                                                                                 <  7:161209/106‑1 (MQ=255)
                                                                                                            aaCATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGtt                                      <  2:306710/149‑1 (MQ=255)
                                                                                                               aTGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAg                                   >  2:289802/1‑149 (MQ=255)
                                                                                                               aTGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAg                                   <  8:100006/149‑1 (MQ=255)
                                                                                                                    cTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTg                              >  7:165348/1‑149 (MQ=255)
                                                                                                                       gTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTgg                             <  5:186310/147‑1 (MQ=255)
                                                                                                                         aCCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAg                                            <  7:328177/130‑1 (MQ=255)
                                                                                                                         aCCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAg                                            >  8:328177/1‑130 (MQ=255)
                                                                                                                          ccGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTg                         <  2:156265/148‑1 (MQ=255)
                                                                                                                             gTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGt                                       >  6:2553/1‑131 (MQ=255)
                                                                                                                                gcgGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGc                  <  6:154628/149‑1 (MQ=255)
                                                                                                                                   gTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGc                                                                                                                <  4:90244/52‑1 (MQ=255)
                                                                                                                                   gTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGc                                                                                                                >  3:90244/1‑52 (MQ=255)
                                                                                                                                    tAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCt              >  5:57731/1‑149 (MQ=255)
                                                                                                                                     aaGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTg             >  1:373355/1‑149 (MQ=255)
                                                                                                                                       gAATCGAAGCGGTAGACCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATTATGATGTCCAGGTCGTTGAGGAGTTGATTGGCGGTTCCGCt              >  6:286808/1‑146 (MQ=255)
                                                                                                                                        aaTCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTgcg           >  2:66090/1‑148 (MQ=255)
                                                                                                                                        aaTCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTgcg           >  3:312269/1‑148 (MQ=255)
                                                                                                                                         cgcGAAGCGTTACGCCTGGGCTACCGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTgcg           >  4:37869/3‑147 (MQ=255)
                                                                                                                                          tCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTGCgcag        >  4:258914/1‑149 (MQ=255)
                                                                                                                                           cGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTGCgcag        >  8:47666/1‑148 (MQ=255)
                                                                                                                                                cGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTGCGCAGCAGCtt  <  5:313701/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
GTGCGCAGGTCAGCCTTGGCGAACCAGCTACGGCGCTGCTCGGCATTGAGGGCCAGCCAGTCTTCAACCAGAGCTTGCTTGATTGGTAACTGCTTTCTCAGCACCTCGAACATGGCCTGGTACCGGTCGCGGTAAGAATCGAAGCGGTAGCCCAGGCGTAACGCTTCGCGCGGGTTATCAAGCACGCTGGTATCTGCCAGTCCCCTGCCCTTGAGCACGGCCAGCAAACCGTTGGGCATGATGCTGTCCAGGTCGTTGAGGCGTGGATTGGCGGTGCCGCTGCGCAGCAGCTT  >  NC_002947/158851‑159143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: