Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,567,267 | T→C | 7.0% | intergenic (+71/‑250) | pcaR → / → pcaK | pca regulon transcriptional regulator/4‑hydroxybenzoate transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,567,267 | 0 | T | C | 7.0% | 163.1 / 2.7 | 57 | intergenic (+71/‑250) | pcaR/pcaK | pca regulon transcriptional regulator/4‑hydroxybenzoate transporter |
Reads supporting (aligned to +/- strand): ref base T (29/24); new base C (2/2); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
CGCAGTGAACTGGAGCAGCGGTTCTTGCCGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGGCCGCACCCGCATGCAGTA > NC_002947/1567119‑1567412 | cGCAGTGAACTGGAGCAGCGGTTCTTGCCGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAgt > 8:340625/1‑149 (MQ=255) cAGTGAACTGGAGCAGCGGTTCTTGCCGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAgtgt > 5:366820/1‑149 (MQ=255) ggAGCAGCGGTTCTTGCCGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCggg > 2:141862/1‑149 (MQ=255) gAGCAGCGGTTCTTGCCGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCgg < 4:62065/147‑1 (MQ=255) gAGCAGCGGTTCTTGCCGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCgg > 3:62065/1‑147 (MQ=255) ccGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTc > 8:50694/1‑149 (MQ=255) gCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGAt < 1:141862/148‑1 (MQ=255) gccagccGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAAt < 8:2870/149‑1 (MQ=255) cagccGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGt < 5:393826/149‑1 (MQ=255) ccGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTCAGGCCCCGGAACAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCAGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGtctc > 7:305100/1‑149 (MQ=255) ccaccaGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCg > 6:373831/1‑149 (MQ=255) caccaGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTTAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCgg < 1:331077/149‑1 (MQ=255) caccaGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCgg > 6:284365/1‑149 (MQ=255) accaGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGc < 6:366820/149‑1 (MQ=255) ccaGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCGCGCAACGGTCGGCt > 8:287230/1‑149 (MQ=255) aGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCTCAACGGTCGGCTAg > 5:95803/1‑149 (MQ=255) aGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAg < 7:340625/149‑1 (MQ=255) ttGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGCGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGccgccc > 7:38893/1‑149 (MQ=255) ttGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGCGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGccgacc > 7:32686/1‑149 (MQ=255) gTTGAGACCGCAGGTAGCACTTTGCTGCCGAGGTTCAGCACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGTCTAGCCGACCGaa < 8:305100/149‑1 (MQ=255) gTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGaa > 7:216490/1‑149 (MQ=255) ttGAGAGCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGccgaccgttg < 2:324809/149‑4 (MQ=255) cAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGAGTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGaaaaa > 6:277880/1‑148 (MQ=255) cACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGccgacc > 1:8622/1‑129 (MQ=255) cACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGccgacc < 2:8622/129‑1 (MQ=255) cACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGCGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTagag < 8:32686/149‑1 (MQ=255) cACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGCGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTagag < 8:38893/149‑1 (MQ=255) tttGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGccgac > 1:294815/1‑125 (MQ=255) tttGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGccgac < 2:294815/125‑1 (MQ=255) tGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGcac < 8:216490/148‑1 (MQ=255) cGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGcactca > 8:210474/1‑149 (MQ=255) ggCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCg > 4:139881/1‑101 (MQ=255) ggCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCg < 3:139881/101‑1 (MQ=255) ggCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGcactcac > 1:283983/1‑149 (MQ=255) ggCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGcactcac > 5:51189/1‑149 (MQ=255) ccccGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCactcactc < 7:50694/149‑1 (MQ=255) ccccGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCactcactc < 5:373831/149‑1 (MQ=255) cccGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCActcactca < 4:201136/149‑1 (MQ=255) ggATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATg > 1:123666/1‑148 (MQ=255) gATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCAGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGaa > 5:194945/1‑149 (MQ=255) aaCAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGt < 8:230834/149‑1 (MQ=255) cAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCa > 3:1000/1‑149 (MQ=255) cAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCa > 4:269778/1‑149 (MQ=255) aaaaCCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGaa < 3:381235/110‑1 (MQ=255) aaaaCCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGaa > 4:381235/1‑110 (MQ=255) aaaaCCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCg > 1:182137/1‑149 (MQ=255) aaaaCCGTTTCCTGTCCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGaaaaa < 6:372166/113‑1 (MQ=255) aaaCCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCgc > 3:277847/1‑149 (MQ=255) aCCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCgctg < 4:277847/149‑1 (MQ=255) tttCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCtgctgc > 6:246760/1‑149 (MQ=255) tttCCTGTCCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCATCGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATCAATACTGTCACCTCGCtgctgc < 7:254217/149‑1 (MQ=255) acacTGTGCGTTTATCGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCg > 4:156270/4‑149 (MQ=255) tgtgCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGGCCg > 6:370064/1‑149 (MQ=255) cGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGGCCGCAc < 6:51189/148‑1 (MQ=255) gATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGTCCGCAccc < 5:277880/149‑1 (MQ=255) gATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGGCCGCAccc < 2:283983/149‑1 (MQ=255) aTAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGGCCGCACCCg > 8:367315/1‑149 (MQ=255) aCGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTATCGGCACTCACTCATGAATACTTTCACCTCGCTGCTGCGGCCGCACCCGCagg > 7:356337/1‑147 (MQ=255) caGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGGCCGCACCCGCATGCAGTa > 5:95833/1‑149 (MQ=255) | CGCAGTGAACTGGAGCAGCGGTTCTTGCCGATTTTGCTGGCAGCCAGCCGGGACCTTTGCCACCAGTTGTTTGGTTGAGACCGCAGGGAGCACTTTGCGGCCCCGGATCAGAACAGGCAAAACCGTTTCCTGTGCGATAAACGCACAGTGTCGTGCCGGGTGAATTGCGTCACCTCGGCCGGCTGATTAATGTCTCTCGCAACGGTCGGCTAGCCGACCGAACAAGAAAAACACTAGAGGCACTCACTCATGAATACTGTCACCTCGCTGCTGCGGCCGCACCCGCATGCAGTA > NC_002947/1567119‑1567412 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |