Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,582,780 T→A 8.4% intergenic (‑226/‑32) ttgA ← / → ttgR efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,582,7800TA 8.4% 163.4 / 5.8 60intergenic (‑226/‑32)ttgA/ttgRefflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR
Reads supporting (aligned to +/- strand):  ref base T (23/31);  new base A (3/2);  total (27/33)
Fisher's exact test for biased strand distribution p-value = 6.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.93e-01

TGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCC  >  NC_002947/1582634‑1582925
                                                                                                                                                  |                                                                                                                                                 
tGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGTGGTGCCCCCGGAGCGTTCCCCGCACGCGCTgc                                                                                                                                                 <  1:252950/149‑1 (MQ=255)
    tAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGt                                                                                                                                             >  6:114907/1‑149 (MQ=255)
     aaaTAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGtt                                                                                                                                            >  2:54763/1‑149 (MQ=255)
        tAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCgg                                                                                                                                         <  5:396131/149‑1 (MQ=255)
                tAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCAACCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGAt                                                                                                                                  >  1:266675/1‑148 (MQ=255)
                tAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCACCGGCAGAGGTGCCCACGGAGCGCTCCCCGCACGCGCTGCGCGTTCGGGCCAGAt                                                                                                                                  >  3:389418/1‑148 (MQ=255)
                   ggAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAgg                                                                                                                              <  6:403168/149‑1 (MQ=255)
                   ggAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAgg                                                                                                                              >  4:125176/1‑149 (MQ=255)
                           cTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTg                                                                                                                      >  6:334758/1‑149 (MQ=255)
                           cTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGATTGATTATCTTATACGATATGCCCCGGCAGATGTGGCCCCGGATCGTTACCCGCACGCGCTTCGCGTTAGGGGCAGATGAGGTTGTACtt                                                                                                                      >  1:319368/1‑148 (MQ=255)
                            ttACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGc                                                                                                                     >  1:50648/1‑149 (MQ=255)
                               cattcattGGTGTTTGTAACTACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCGCTGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGGTGTACTGCCa                                                                                                                   <  6:333538/148‑1 (MQ=255)
                               cATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCAt                                                                                                                  <  6:280039/149‑1 (MQ=255)
                                    aTGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTcc                                                                                                             <  5:334758/149‑1 (MQ=255)
                                       gttgttTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGt                                                                                                           <  5:114907/148‑1 (MQ=255)
                                        ttgtttgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCg                                                                                                         <  7:85351/149‑1 (MQ=255)
                                              gtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCa                                                                                                    >  5:56028/1‑148 (MQ=255)
                                                 aaTACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAaag                                                                                                 <  2:50648/148‑1 (MQ=255)
                                                 aaTACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGGTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAaag                                                                                                 <  3:345729/148‑1 (MQ=255)
                                                  aTAGTGCTGCGTGGTACTCAGGTACAGCCTCAGCGCTTTATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAaagaa                                                                                               <  2:166561/149‑1 (MQ=255)
                                                  aTACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAaagaa                                                                                               <  3:125176/149‑1 (MQ=255)
                                                         tgGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCgg                                                                                                                                         <  7:112725/100‑1 (MQ=255)
                                                         tgGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCgg                                                                                                                                         >  8:112725/1‑100 (MQ=255)
                                                           ggtggtACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAg                                                                                      >  3:165083/1‑149 (MQ=255)
                                                           ggtggtACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAg                                                                                      <  4:163109/149‑1 (MQ=255)
                                                                tACTAAGGTACAGCCTCAGCCCTTGATTAGCATTTCCGAGAGGCCCCCGCAGAGGTGCCCCCGGAGCGTTACCCGCACCCGCGGCGCGTTCGGGCCCTATGAGGGTTTAATGCCAAGGTCCGTCGGACCAAAGAAGAACCCCAGGtaaa                                                                                 >  8:165883/1‑148 (MQ=255)
                                                                      ggTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGc                                                                           >  3:22868/1‑149 (MQ=255)
                                                                          cAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGcc                                                                          >  5:18993/1‑146 (MQ=255)
                                                                               taaGCACTTGATAATCTTATCCAACAGGCACCGTCAGAGGTGCCACCTGAGCGTTCCCCTCACCCACTTCACCTTCGAGCCAGATGAGCTTCTACTCCCATAATCCCTCGAACCAAAGAAGAAGCCCAAGAAACCCCAGCCAAGatcat                                                                  >  8:290380/3‑149 (MQ=255)
                                                                               tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAAc                                                                                                      >  5:357402/1‑113 (MQ=255)
                                                                               tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAAc                                                                                                      <  6:357402/113‑1 (MQ=255)
                                                                               tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat                                                                  >  3:403105/1‑149 (MQ=255)
                                                                               tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat                                                                  >  6:31010/1‑149 (MQ=255)
                                                                                  gcgcTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGa                                                               <  2:266675/149‑1 (MQ=255)
                                                                                   cgcTTGATTAGCTTATCCGAGAGGCCCCGGAAGAGGTGCCCCGGAGCGTTCCCCGCAAGCGCTGCGCGTTCGTGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat                                                                  <  7:372340/144‑1 (MQ=255)
                                                                                   cgcTTGATTAGCTTATACGAGAGGCCCCGGCAGAGGTGCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGTAACCCCGTGACCAGatcatcatat                                                             >  8:372340/1‑145 (MQ=255)
                                                                                        gATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAggcgg                                                          <  7:165883/148‑1 (MQ=255)
                                                                                             gCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGa                                                      >  1:50226/1‑147 (MQ=255)
                                                                                              cTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAg                                                   <  4:22868/149‑1 (MQ=255)
                                                                                              cTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAg                                                   <  6:56028/149‑1 (MQ=255)
                                                                                                 aTCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAgg                                                  <  2:351979/147‑1 (MQ=255)
                                                                                                 aTCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAgg                                                  <  2:346382/147‑1 (MQ=255)
                                                                                                    cGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCTATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCtt                                             >  5:290176/1‑149 (MQ=255)
                                                                                                      agagGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCt                                           <  1:69875/149‑1 (MQ=255)
                                                                                                        agGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTAc                                         <  4:165083/149‑1 (MQ=255)
                                                                                                         tggcccGTCAGAGGTGCCCCCGGAGCGTTCGCCGCACGAGCTTCGCGTTCGGGCCAGATGATGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCATGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTAc                                         <  7:290380/145‑1 (MQ=255)
                                                                                                                gCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCgg                                 >  8:357727/1‑149 (MQ=255)
                                                                                                                      gTGCCCCCGGAGCGTTCCCCGGACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGcc                                               <  7:290699/129‑1 (MQ=255)
                                                                                                                      gTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCTCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTgc                           <  2:319368/149‑1 (MQ=255)
                                                                                                                      gTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAg                                                                       >  2:150258/1‑105 (MQ=255)
                                                                                                                      gTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAg                                                                       <  1:150258/105‑1 (MQ=255)
                                                                                                                            ccGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGcgcgtca                     >  3:218805/1‑146 (MQ=255)
                                                                                                                                    ttCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTAc                                         >  3:160586/1‑121 (MQ=255)
                                                                                                                                    ttCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTAc                                         <  4:160586/121‑1 (MQ=255)
                                                                                                                                       cccGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCg          <  7:357727/149‑1 (MQ=255)
                                                                                                                                       cccGAACGCGCAGCGCGTGCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGcc           >  5:273308/1‑148 (MQ=255)
                                                                                                                                        ccGAACGCGCAGCGCGTGCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGa         >  8:95528/1‑149 (MQ=255)
                                                                                                                                            aCGCGCAGCGCGTGCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATc     <  7:95528/149‑1 (MQ=255)
                                                                                                                                             cgcgCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCg    <  6:18993/149‑1 (MQ=255)
                                                                                                                                               cgcTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGcc  <  4:389418/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
TGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCGTCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCC  >  NC_002947/1582634‑1582925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: