| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,620,347 | G→C | 5.9% | intergenic (‑113/‑88) | opdH ← / → tctD | tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,620,347 | 0 | G | C | 5.9% | 312.4 / 6.5 | 97 | intergenic (‑113/‑88) | opdH/tctD | tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD |
| Reads supporting (aligned to +/- strand): ref base G (44/46); new base C (3/3); total (47/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.94e-01 | |||||||||||
GTAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGCCTTG > NC_002947/1620200‑1620494 | gTAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGc > 4:168155/1‑149 (MQ=255)gTAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGc > 5:146986/1‑149 (MQ=255) tAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCg > 5:232715/1‑149 (MQ=255) tAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCg < 5:287403/149‑1 (MQ=255) gcgAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGaaa < 6:322569/149‑1 (MQ=255) gcgAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGaaa < 1:237709/149‑1 (MQ=255) gcgAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGa > 7:191918/1‑147 (MQ=255) cGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGttt < 5:239087/149‑1 (MQ=255) cGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGttt < 3:260986/149‑1 (MQ=255) cGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGttt < 1:185942/149‑1 (MQ=255) cGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCACGCTGAAAGGtta < 6:290826/149‑2 (MQ=255) gCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCACGCTGAAAGGttag < 2:173021/149‑3 (MQ=255) cTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGt > 8:65954/1‑148 (MQ=255) cTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGt > 8:29217/1‑148 (MQ=255) cTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGt > 3:284430/1‑148 (MQ=255) cTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCACGCTGAAAGGtta > 5:382152/1‑145 (MQ=255) cTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCACGCTGAAAGGtta < 6:382152/146‑2 (MQ=255) gCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGa < 1:72199/149‑1 (MQ=255) gCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAg < 5:144763/149‑1 (MQ=255) cGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGc < 7:65954/149‑1 (MQ=255) gATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCt > 1:128142/1‑149 (MQ=255) gtggATGACTACGTTTTTTGTTCTTATTCGTTGCAACTTGCTGGTGCTTTTTTCGTCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACGTTTCAGCGTTAAAGGTTTGTCACGAGGGGCTTCACAGTCgtg < 4:284430/145‑1 (MQ=255) gATGACGCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGa < 5:320190/149‑1 (MQ=255) aCTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGc > 6:383814/1‑149 (MQ=255) aCTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTATAAGCGTGAAAGGTTTGTCCCGAGGGGCTTCACAGGAGTGGTGAAAGc > 6:34922/1‑149 (MQ=255) tCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCgg > 3:352055/1‑149 (MQ=255) tCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCgg > 2:22999/1‑149 (MQ=255) cGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTa > 5:161521/1‑149 (MQ=255) cGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTa < 1:185219/149‑1 (MQ=255) gTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGa < 3:66393/119‑1 (MQ=255) gTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGa > 4:66393/1‑119 (MQ=255) tttATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTaca > 8:162701/1‑149 (MQ=255) tATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCGAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACt > 7:215343/1‑149 (MQ=255) aTTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTc > 2:302842/1‑149 (MQ=255) aTTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTc > 2:337628/1‑149 (MQ=255) ttGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCgtg < 8:296310/131‑1 (MQ=255) ttGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCgtg > 7:296310/1‑131 (MQ=255) ttCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCcgcg > 2:213192/1‑149 (MQ=255) ttCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCcgc < 6:232715/148‑1 (MQ=255) tCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAgg < 5:309463/112‑1 (MQ=255) tCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAgg > 6:309463/1‑112 (MQ=255) cACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCAcc > 5:417497/1‑149 (MQ=255) aCCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCAccc > 4:277330/1‑149 (MQ=255) aCCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCAccc > 8:19969/1‑149 (MQ=255) gCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGc < 7:126199/148‑1 (MQ=255) tGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTaca > 6:216051/1‑121 (MQ=255) tGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTaca < 5:216051/121‑1 (MQ=255) gaggttttttCGGCGCGATGGGGGACGGTCGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAggg < 2:161167/144‑1 (MQ=255) gTGCATTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGAGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGga < 2:326018/149‑1 (MQ=255) cTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCCCCCGAGCAGGGAGaa > 3:294080/1‑149 (MQ=255) ttttttCGGCGCGAAGGGCGACCGTGGTGCGATGGTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAAt > 1:267149/1‑149 (MQ=255) ttttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAAt > 3:403615/1‑149 (MQ=255) tttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATc > 2:214451/1‑149 (MQ=255) gcgcGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCg < 7:19969/149‑1 (MQ=255) cgAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCgtgt < 2:194329/149‑1 (MQ=255) gAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGtgtg < 7:182702/149‑1 (MQ=255) aaGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGc < 1:158884/149‑1 (MQ=255) aaGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGACCAGGGAGAATCCGATGCGtgtg > 5:62813/1‑148 (MQ=255) ggCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTAc > 3:213311/1‑149 (MQ=255) ggCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCAGATGCGTGTGCTAc > 1:95647/1‑149 (MQ=255) cGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTg < 1:211360/149‑1 (MQ=255) gACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTgg < 6:417497/149‑1 (MQ=255) gACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTgg > 5:258787/1‑149 (MQ=255) gACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTgg < 6:146986/149‑1 (MQ=255) tggtgCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGaa < 6:258787/149‑1 (MQ=255) gtgCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAg < 1:302842/148‑1 (MQ=255) gtgCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAg < 2:58582/148‑1 (MQ=255) gtgCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGa < 3:277330/149‑1 (MQ=255) gCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGac > 6:278845/1‑148 (MQ=255) cGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGacca < 1:337628/149‑1 (MQ=255) cGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGacca > 6:251973/1‑149 (MQ=255) cGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGacc < 4:403615/148‑1 (MQ=255) gATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGaccac < 6:62813/149‑1 (MQ=255) ggCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGtgtg > 6:117308/1‑124 (MQ=255) ggCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGtgtg < 5:117308/124‑1 (MQ=255) gCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAg > 6:264103/1‑104 (MQ=255) gCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAg < 5:264103/104‑1 (MQ=255) cAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTg > 6:267620/1‑149 (MQ=255) aaCGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTgg > 4:317737/1‑149 (MQ=255) aCGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGc < 3:168155/149‑1 (MQ=255) aCGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGc < 1:22999/149‑1 (MQ=255) gAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGcc > 1:102900/1‑148 (MQ=255) tttCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGc > 8:6907/1‑149 (MQ=255) tCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCg < 6:161521/148‑1 (MQ=255) gacaaaCCTTTCACGCTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTTCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTg > 1:123771/5‑149 (MQ=255) gCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTgg < 3:175813/149‑1 (MQ=255) aaaCCTTTCACGCTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGcc > 8:258607/2‑149 (MQ=255) aCCTTTCATCTTGAATGGTTTGTCACGTGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCA‑GGAGAATCCGATGCTTGTGCTACTGGTCGAAGACCACTTGCAACTGGCCGAAAGCGTGGcc < 7:255745/146‑1 (MQ=255) aCCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGccc < 8:215343/148‑1 (MQ=255) aCCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGcc < 1:214451/147‑1 (MQ=255) cTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTgg > 4:389923/1‑149 (MQ=255) cTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCAGCAACTGGCCGAAAGCGTGGCCCTgg > 1:264443/1‑149 (MQ=255) tttCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc > 7:382237/1‑149 (MQ=255) tCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc < 5:267620/147‑1 (MQ=255) tCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc < 4:294080/147‑1 (MQ=255) tCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc < 2:128142/147‑1 (MQ=255) aGCGTGAAAGGTTTGTCACGAGGGGCTTCAGAGGCGTTGTGCCAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGTGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTTGCCGAAAGCGTGGCCCTGGCCtt < 5:34922/148‑1 (MQ=255) gCGTGAAAGGTTTGTCGCGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGCATCCGATGCGTGTGCTACTGGTCGAAGACCCCCTGCGACTGGCCGAACGCGTGGGCCTGGCCTTg > 4:335133/1‑148 (MQ=255) | GTAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCGTTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAA‑CCTTTCGCTAACCTTTCAGCGTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGCCTTG > NC_002947/1620200‑1620494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |