| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,559 | C→A | 36.2% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 36.2% | 145.1 / 107.6 | 113 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (33/39); new base A (20/21); total (53/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.18e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACC > NC_002947/195412‑195707 | ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACAGGCCAATGACGTCTACAACAACGGTTCGCCCGTCAGCGTCCCCCTCGAGAACGCCACcg > 8:261317/1‑149 (MQ=11) gtgaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAAtt > 8:125130/1‑148 (MQ=35) accgtgaccCTGTCCAACGGCGAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACGCCGGCCAATGACGTCTACAACAACGGTTCGTCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 6:417727/149‑1 (MQ=255) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTGGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 6:49172/149‑1 (MQ=21) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 7:125130/149‑1 (MQ=34) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 8:296474/149‑1 (MQ=34) cgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 8:344630/147‑1 (MQ=34) cgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 7:344630/1‑147 (MQ=34) cTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAc > 4:62578/1‑149 (MQ=39) ccAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 7:89361/1‑137 (MQ=35) ccAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 8:89361/137‑1 (MQ=35) ggCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATcc < 7:261317/149‑1 (MQ=255) gacAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATcc < 3:356352/146‑1 (MQ=255) gCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCg < 1:380865/149‑1 (MQ=255) atcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGc > 1:337712/1‑149 (MQ=255) caCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCt > 8:32139/1‑148 (MQ=40) aCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCt > 3:356460/1‑147 (MQ=39) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCACGGCTCAGA‑‑c > 5:316569/1‑148 (MQ=37) tGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCa > 6:114250/1‑149 (MQ=37) gAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCa < 5:114250/148‑1 (MQ=37) aaGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCAc > 5:192733/1‑148 (MQ=37) aGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACg > 6:259532/1‑148 (MQ=37) ccGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGAt > 1:81404/1‑148 (MQ=37) aaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACt < 5:259532/149‑1 (MQ=35) cccAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑Cg < 2:81404/149‑1 (MQ=34) cccAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑Cg < 4:297127/149‑1 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCa > 4:259487/1‑129 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑Cgg > 7:217109/1‑149 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTc < 2:127319/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTc < 4:7588/149‑1 (MQ=34) gTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGAcaccac > 2:211270/1‑149 (MQ=39) cGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGCACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGAcaccacca < 1:195868/149‑1 (MQ=255) tCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACcgc > 4:162798/1‑148 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGAcc < 3:162798/149‑1 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACgg > 7:375808/1‑149 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACgg > 1:108561/1‑149 (MQ=39) cgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCg < 3:259432/147‑1 (MQ=2) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAg < 6:362503/149‑1 (MQ=17) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGc < 8:217109/149‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTATCATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAg < 1:126413/149‑1 (MQ=11) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAccc > 6:382816/1‑149 (MQ=12) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCTACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGccc < 8:125178/148‑1 (MQ=12) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGt < 8:356576/149‑1 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc > 5:241792/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:220032/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 4:315687/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGa‑‑a < 3:338922/71‑1 (MQ=34) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAccc < 6:122396/127‑1 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAccc > 5:122396/1‑127 (MQ=17) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGAt > 3:7818/1‑93 (MQ=33) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGAt < 4:7818/93‑1 (MQ=33) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACcgcg > 1:207451/1‑121 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACcg < 7:69760/118‑1 (MQ=12) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACcg > 8:69760/1‑118 (MQ=12) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:258619/1‑147 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 1:203824/149‑1 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 4:220032/149‑1 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcc > 1:282707/1‑148 (MQ=17) tCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCTCCGAAggcgg > 8:183571/1‑149 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCACGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:258619/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCACGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACAACCGCGACCCTGACGGCGAGCCCGTCGGACACCCAAGgcgccg > 1:314163/1‑149 (MQ=11) gTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 6:53721/46‑1 (MQ=38) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAcc < 6:202814/111‑1 (MQ=12) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 3:97253/149‑1 (MQ=17) gTCAGCGTCACAATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAcc > 5:202814/1‑111 (MQ=255) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 8:125930/1‑148 (MQ=39) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGAGGTAACGATCAACGACTAGGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:329981/1‑148 (MQ=11) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 4:320868/127‑1 (MQ=17) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg > 3:320868/1‑127 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 7:355104/148‑1 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 8:35626/149‑1 (MQ=17) aGCGTCACCATCCAGAACGCCACCGGCGGTAAATTCGAGCAACTGACCCCGA‑‑CTCCGACCCCGGCTGAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCTCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATctc < 8:116046/149‑3 (MQ=14) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 6:241792/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 8:375808/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGACCAACTGACCCCGA‑‑ATCCGACCCCCGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 5:373231/149‑1 (MQ=255) cGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 7:125930/149‑1 (MQ=39) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTac < 7:376077/149‑1 (MQ=17) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 1:169692/1‑148 (MQ=17) aCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 5:139473/1‑149 (MQ=39) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 6:220925/1‑149 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 4:85051/1‑149 (MQ=39) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 5:398069/1‑148 (MQ=17) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 6:398069/148‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 2:312634/147‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 1:312634/1‑147 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 3:344313/1‑149 (MQ=17) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 6:124361/1‑148 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 3:225599/1‑131 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:32490/1‑148 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:23821/1‑148 (MQ=17) gagaACGCGACAGGCGGTAATTTAGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTTACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAGACCGTGa < 2:314163/148‑1 (MQ=11) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 3:300868/148‑1 (MQ=17) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑TGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:138771/1‑131 (MQ=37) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑TGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 4:138771/131‑1 (MQ=37) aaCGCCACCGGCCGTAATTTCGACCAACTGACCACGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCTCCACCGCTACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACACt < 4:309225/149‑1 (MQ=14) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:169692/148‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:32490/149‑1 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGC‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 6:193668/1‑148 (MQ=12) cggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:25712/1‑123 (MQ=38) cggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 4:25712/123‑1 (MQ=38) | CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACC > NC_002947/195412‑195707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |