| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,628 | C→T | 10.4% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,628 | 0 | C | T | 10.4% | 349.2 / 25.3 | 144 | D378D (GAC→GAT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (65/63); new base T (7/8); total (72/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.22e-01 | |||||||||||
Only 100 of 147 total aligned reads displayed.
GTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195485‑195775 | gTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGAcaccac > 2:211270/1‑149 (MQ=39) tCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACcgc > 4:162798/1‑148 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGAcc < 3:162798/149‑1 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACgg > 1:108561/1‑149 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACgg > 7:375808/1‑149 (MQ=39) cgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCg < 3:259432/147‑1 (MQ=2) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGc < 8:217109/149‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTATCATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAg < 1:126413/149‑1 (MQ=11) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAccc > 6:382816/1‑149 (MQ=12) gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGccc > 8:355104/1‑149 (MQ=17) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCTACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGccc < 8:125178/148‑1 (MQ=12) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGt < 8:356576/149‑1 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc > 5:241792/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:220032/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 4:315687/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAccc < 6:122396/127‑1 (MQ=17) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACcgcg > 1:207451/1‑121 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACcg < 7:69760/118‑1 (MQ=12) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACcg > 8:69760/1‑118 (MQ=12) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:258619/1‑147 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 4:220032/149‑1 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 1:203824/149‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCACGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACAACCGCGACCCTGACGGCGAGCCCGTCGGACACCCAAGgcgccg > 1:314163/1‑149 (MQ=11) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAcc < 6:202814/111‑1 (MQ=12) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 3:97253/149‑1 (MQ=17) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 8:125930/1‑148 (MQ=39) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGAGGTAACGATCAACGACTAGGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:329981/1‑148 (MQ=11) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 8:21149/1‑148 (MQ=17) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg > 3:320868/1‑127 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 7:355104/148‑1 (MQ=17) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 8:375808/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 6:241792/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGACCAACTGACCCCGA‑‑ATCCGACCCCCGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 5:373231/149‑1 (MQ=255) cGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 7:125930/149‑1 (MQ=39) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTac < 7:376077/149‑1 (MQ=17) aCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 5:139473/1‑149 (MQ=39) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 6:220925/1‑149 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCCCGATCAACGACT‑CGGTCGACACCACCCCCGCGACCCTGCCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 5:119897/1‑149 (MQ=255) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 4:85051/1‑149 (MQ=39) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 5:398069/1‑148 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 1:312634/1‑147 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 2:312634/147‑1 (MQ=17) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 6:124361/1‑148 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 3:225599/1‑131 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:32490/1‑148 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:23821/1‑148 (MQ=17) gagaACGCGACAGGCGGTAATTTAGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTTACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAGACCGTGa < 2:314163/148‑1 (MQ=11) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑TGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:138771/1‑131 (MQ=37) aaCGCCACCGGCCGTAATTTCGACCAACTGACCACGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCTCCACCGCTACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACACt < 4:309225/149‑1 (MQ=14) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:169692/148‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:32490/149‑1 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGC‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 6:193668/1‑148 (MQ=12) cggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 4:25712/123‑1 (MQ=38) aggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 3:6210/148‑1 (MQ=11) ggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc < 2:337712/149‑1 (MQ=39) tAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 6:369798/149‑1 (MQ=17) aTTTCGTGCAAGTGTCCCCGA‑‑ATGCGAGCCGGGCTCAGT‑‑CCTCTATCAACGTCT‑CGGTCGATGCCACCAGCGCGACGCTGTAGTCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCTCTTACACCGTGACCCTGAGCAACCGTGCCCa < 4:6259/148‑1 (MQ=2) aTTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa < 6:62587/148‑1 (MQ=17) aTTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa < 3:270346/148‑1 (MQ=17) aTTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa < 3:315687/148‑1 (MQ=21) tttCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa > 2:187246/1‑149 (MQ=39) tCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc < 1:187246/148‑1 (MQ=39) cGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc > 3:167698/1‑149 (MQ=39) gAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGcc > 7:11585/1‑149 (MQ=17) cAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt < 5:372975/149‑1 (MQ=21) aaCTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt > 5:43236/1‑148 (MQ=21) tGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc > 8:287097/1‑149 (MQ=2) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa > 2:324916/1‑149 (MQ=12) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGa < 4:212821/149‑1 (MQ=255) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 8:2462/1‑148 (MQ=255) ccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 4:344313/149‑1 (MQ=255) ccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 7:27670/144‑1 (MQ=40) cGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc > 7:151506/1‑147 (MQ=2) aTCCGACCCCGGCTCAGA‑‑CCAAGATCAACGACT‑CGGACGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTg > 8:81749/1‑149 (MQ=255) tCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt > 4:376802/1‑149 (MQ=255) gACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 7:244434/130‑1 (MQ=17) ccccGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 5:220925/149‑1 (MQ=38) cccGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg > 1:184035/1‑149 (MQ=40) cAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCTTTAACCTGTCCAACGGCCAAAc < 1:227809/149‑1 (MQ=255) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc < 6:43236/148‑1 (MQ=37) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc < 2:23821/148‑1 (MQ=37) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCcaaa > 2:227809/1‑147 (MQ=255) gA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 4:356460/149‑1 (MQ=39) a‑‑CCACTATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 1:106725/149‑1 (MQ=255) a‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 1:108657/1‑149 (MQ=39) ccACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt < 5:193668/149‑1 (MQ=255) ccACGATCAACGACT‑CGGTCGACACCACCACCGCGAGCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt < 7:89536/149‑1 (MQ=255) cACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 4:135289/1‑149 (MQ=39) gATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:94987/1‑149 (MQ=39) gATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc > 1:394988/1‑108 (MQ=25) tgaaCGAGT‑CGGTCGAGACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCTTGACCCTGAGCTACCCTGCCCAGACGCCTGTAACCGTGAACGTGTCCAACGGCCAAACGa < 4:150533/139‑1 (MQ=14) tCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 2:282707/149‑1 (MQ=255) cGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAg > 6:127597/1‑149 (MQ=255) cT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 3:376802/149‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 3:196747/1‑148 (MQ=255) gTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa > 2:374046/1‑148 (MQ=39) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaa > 1:86168/1‑148 (MQ=255) cGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa > 7:281138/1‑149 (MQ=255) cGACACCACAACAGCGACCCTGTCGGCGAGACCGTCGGGCACCGAACGCGGCGAGATCACATTCACACTCTCCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 3:138487/149‑1 (MQ=11) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc > 1:163088/1‑149 (MQ=255) | GTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195485‑195775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |