| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,629 | A→G | 10.4% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,629 | 0 | A | G | 10.4% | 342.2 / 27.7 | 144 | T379A (ACC→GCC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (65/64); new base G (7/8); total (72/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.13e-01 | |||||||||||
Only 100 of 150 total aligned reads displayed.
GTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195485‑195775 | gTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGAcaccac > 2:211270/1‑149 (MQ=39) cGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGCACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGAcaccacca < 1:195868/149‑1 (MQ=255) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGAcc < 3:162798/149‑1 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACgg > 1:108561/1‑149 (MQ=39) cgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCg < 3:259432/147‑1 (MQ=2) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGc < 8:217109/149‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTATCATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAg < 1:126413/149‑1 (MQ=11) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAccc > 6:382816/1‑149 (MQ=12) gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGccc > 8:355104/1‑149 (MQ=17) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGt < 8:356576/149‑1 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc > 5:241792/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:220032/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 4:315687/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAccc > 5:122396/1‑127 (MQ=17) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACcgcg > 1:207451/1‑121 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACcg > 8:69760/1‑118 (MQ=12) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:258619/1‑147 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 1:211270/149‑1 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcc > 1:282707/1‑148 (MQ=17) tCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCTCCGAAggcgg > 8:183571/1‑149 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCACGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACAACCGCGACCCTGACGGCGAGCCCGTCGGACACCCAAGgcgccg > 1:314163/1‑149 (MQ=11) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAcc < 6:202814/111‑1 (MQ=12) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 3:97253/149‑1 (MQ=17) gTCAGCGTCACAATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAcc > 5:202814/1‑111 (MQ=255) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 8:125930/1‑148 (MQ=39) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGAGGTAACGATCAACGACTAGGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:329981/1‑148 (MQ=11) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 4:320868/127‑1 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 7:355104/148‑1 (MQ=17) aGCGTCACCATCCAGAACGCCACCGGCGGTAAATTCGAGCAACTGACCCCGA‑‑CTCCGACCCCGGCTGAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCTCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATctc < 8:116046/149‑3 (MQ=14) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 6:241792/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 8:375808/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGACCAACTGACCCCGA‑‑ATCCGACCCCCGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 5:373231/149‑1 (MQ=255) cGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 7:125930/149‑1 (MQ=39) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTac < 7:376077/149‑1 (MQ=17) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 1:169692/1‑148 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 6:220925/1‑149 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCCCGATCAACGACT‑CGGTCGACACCACCCCCGCGACCCTGCCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 5:119897/1‑149 (MQ=255) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 2:312634/147‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 3:344313/1‑149 (MQ=17) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 6:124361/1‑148 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 4:225599/131‑1 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:23821/1‑148 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:32490/1‑148 (MQ=17) gagaACGCGACAGGCGGTAATTTAGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTTACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAGACCGTGa < 2:314163/148‑1 (MQ=11) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 3:300868/148‑1 (MQ=17) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑TGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 4:138771/131‑1 (MQ=37) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑TGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:138771/1‑131 (MQ=37) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:169692/148‑1 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGC‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 6:193668/1‑148 (MQ=12) cggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:25712/1‑123 (MQ=38) cggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 4:25712/123‑1 (MQ=38) ggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAccc < 5:53376/149‑1 (MQ=17) gcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACAACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt < 4:208149/149‑1 (MQ=21) ggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc < 2:337712/149‑1 (MQ=39) tattttCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑ACACGATCAACGACT‑AGGTCGATGCCACAAACGCGACACTGACGGCGAGCCCGTCGTTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGca > 5:286788/4‑147 (MQ=11) tAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 6:369798/149‑1 (MQ=17) aTTTCGTGCAAGTGTCCCCGA‑‑ATGCGAGCCGGGCTCAGT‑‑CCTCTATCAACGTCT‑CGGTCGATGCCACCAGCGCGACGCTGTAGTCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCTCTTACACCGTGACCCTGAGCAACCGTGCCCa < 4:6259/148‑1 (MQ=2) aTTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa < 6:62587/148‑1 (MQ=17) aTTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa < 3:315687/148‑1 (MQ=21) tttCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa > 2:187246/1‑149 (MQ=39) tCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc < 1:187246/148‑1 (MQ=39) cGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc > 3:167698/1‑149 (MQ=39) gAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGcc > 7:11585/1‑149 (MQ=17) aaCTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt > 5:43236/1‑148 (MQ=21) tGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc > 8:287097/1‑149 (MQ=2) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa > 2:324916/1‑149 (MQ=12) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGa < 4:212821/149‑1 (MQ=255) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 3:212821/1‑148 (MQ=255) ccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 7:27670/144‑1 (MQ=40) ccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACATACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 1:338875/1‑149 (MQ=255) cGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc > 7:151506/1‑147 (MQ=2) cGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc > 4:7380/1‑147 (MQ=255) cGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 1:321053/149‑1 (MQ=255) aTCCGACCCCGGCTCAGA‑‑CCAAGATCAACGACT‑CGGACGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTg > 8:81749/1‑149 (MQ=255) gACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg > 8:244434/1‑130 (MQ=17) gACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 7:244434/130‑1 (MQ=17) gACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCAGGTAACCGTGAACCTGTcc > 4:357121/1‑148 (MQ=255) ggCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc < 3:85051/149‑1 (MQ=39) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc < 2:23821/148‑1 (MQ=37) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc < 6:43236/148‑1 (MQ=37) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCcaaa > 2:227809/1‑147 (MQ=255) gA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 4:356460/149‑1 (MQ=39) a‑‑CCACTATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 1:106725/149‑1 (MQ=255) a‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 1:124093/1‑149 (MQ=39) ccACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt < 5:193668/149‑1 (MQ=255) ccACGATCAACGACT‑CGGTCGACACCACCACCGCGAGCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt < 7:89536/149‑1 (MQ=255) gATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:94987/1‑149 (MQ=39) tgaaCGAGT‑CGGTCGAGACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCTTGACCCTGAGCTACCCTGCCCAGACGCCTGTAACCGTGAACGTGTCCAACGGCCAAACGa < 4:150533/139‑1 (MQ=14) tCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 2:282707/149‑1 (MQ=255) cGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAg > 6:127597/1‑149 (MQ=255) cT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCTGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 7:69656/149‑1 (MQ=255) cT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 3:376802/149‑1 (MQ=39) ggTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 5:3802/1‑148 (MQ=39) gTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa > 2:374046/1‑148 (MQ=39) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaa > 1:86168/1‑148 (MQ=255) cGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa > 7:281138/1‑149 (MQ=255) cGACACCACAACAGCGACCCTGTCGGCGAGACCGTCGGGCACCGAACGCGGCGAGATCACATTCACACTCTCCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 3:138487/149‑1 (MQ=11) accactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCAAAACGATTACCGTTGAAGCGGGTAAAAcc > 1:173182/1‑147 (MQ=255) accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAc > 8:272794/1‑128 (MQ=40) accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAc < 7:272794/128‑1 (MQ=40) | GTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195485‑195775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |