| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,634 | C→T | 46.2% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 46.2% | 61.5 / 182.3 | 145 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (41/35); new base T (30/36); total (73/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.45e-01 | |||||||||||
Only 100 of 157 total aligned reads displayed.
CGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG > NC_002947/195487‑195780 | tCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACcgc > 4:162798/1‑148 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGAcc < 3:162798/149‑1 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACgg > 1:108561/1‑149 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACgg > 7:375808/1‑149 (MQ=39) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAg < 6:362503/149‑1 (MQ=17) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGc < 8:217109/149‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTATCATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAg < 1:126413/149‑1 (MQ=11) gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGccc > 8:355104/1‑149 (MQ=17) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc > 5:241792/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 4:315687/1‑149 (MQ=17) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:258619/1‑147 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 4:220032/149‑1 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 1:203824/149‑1 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 1:211270/149‑1 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcc > 1:282707/1‑148 (MQ=17) tCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCTCCGAAggcgg > 8:183571/1‑149 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCACGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 7:258619/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCACGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACAACCGCGACCCTGACGGCGAGCCCGTCGGACACCCAAGgcgccg > 1:314163/1‑149 (MQ=11) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGAcc < 6:202814/111‑1 (MQ=12) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 3:97253/149‑1 (MQ=17) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 8:125930/1‑148 (MQ=39) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGAGGTAACGATCAACGACTAGGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:329981/1‑148 (MQ=11) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg > 3:320868/1‑127 (MQ=17) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 4:320868/127‑1 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 7:355104/148‑1 (MQ=17) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 8:35626/149‑1 (MQ=17) aGCGTCACCATCCAGAACGCCACCGGCGGTAAATTCGAGCAACTGACCCCGA‑‑CTCCGACCCCGGCTGAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCTCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATctc < 8:116046/149‑3 (MQ=14) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 8:375808/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGACCAACTGACCCCGA‑‑ATCCGACCCCCGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 5:373231/149‑1 (MQ=255) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 1:169692/1‑148 (MQ=17) aCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 5:139473/1‑149 (MQ=39) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 6:220925/1‑149 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCCCGATCAACGACT‑CGGTCGACACCACCCCCGCGACCCTGCCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 5:119897/1‑149 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 6:398069/148‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 2:312634/147‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 3:344313/1‑149 (MQ=17) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 6:124361/1‑148 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 3:225599/1‑131 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:32490/1‑148 (MQ=17) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 3:300868/148‑1 (MQ=17) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑TGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:138771/1‑131 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGC‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 6:193668/1‑148 (MQ=12) cggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 4:25712/123‑1 (MQ=38) cggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 3:25712/1‑123 (MQ=38) aggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 3:6210/148‑1 (MQ=11) ggcggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAccc < 5:53376/149‑1 (MQ=17) ggTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc < 2:294665/149‑1 (MQ=17) tAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 6:369798/149‑1 (MQ=17) aTTTCGTGCAAGTGTCCCCGA‑‑ATGCGAGCCGGGCTCAGT‑‑CCTCTATCAACGTCT‑CGGTCGATGCCACCAGCGCGACGCTGTAGTCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCTCTTACACCGTGACCCTGAGCAACCGTGCCCa < 4:6259/148‑1 (MQ=2) aTTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa < 3:270346/148‑1 (MQ=17) tttCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa > 6:98977/1‑149 (MQ=17) tttCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa > 2:187246/1‑149 (MQ=39) tCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc < 1:187246/148‑1 (MQ=39) cGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc > 3:167698/1‑149 (MQ=39) gAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGcc > 7:11585/1‑149 (MQ=17) cAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt < 5:372975/149‑1 (MQ=21) aaCTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt > 5:43236/1‑148 (MQ=21) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGa < 4:212821/149‑1 (MQ=255) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 3:212821/1‑148 (MQ=255) cccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 2:321053/1‑148 (MQ=255) ccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 7:27670/144‑1 (MQ=40) ccGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc > 8:27670/1‑144 (MQ=40) cGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc > 4:7380/1‑147 (MQ=255) cGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 1:321053/149‑1 (MQ=255) aTCCGACCCCGGCTCAGA‑‑CCAAGATCAACGACT‑CGGACGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTg > 8:81749/1‑149 (MQ=255) gACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg > 8:244434/1‑130 (MQ=17) gACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 7:244434/130‑1 (MQ=17) gACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCAGGTAACCGTGAACCTGTcc > 4:357121/1‑148 (MQ=255) ccccGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 5:220925/149‑1 (MQ=38) cccGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg > 1:184035/1‑149 (MQ=40) cAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCTTTAACCTGTCCAACGGCCAAAc < 1:227809/149‑1 (MQ=255) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc < 2:23821/148‑1 (MQ=37) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc < 6:43236/148‑1 (MQ=37) aGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCcaaa > 2:227809/1‑147 (MQ=255) gA‑‑CCACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa > 8:69656/1‑149 (MQ=38) gA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 4:356460/149‑1 (MQ=39) a‑‑CCACTATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 1:106725/149‑1 (MQ=255) a‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 1:124093/1‑149 (MQ=39) ccACGATCAACGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt < 5:193668/149‑1 (MQ=255) ccACGATCAACGACT‑CGGTCGACACCACCACCGCGAGCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt < 7:89536/149‑1 (MQ=255) cACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa < 2:108561/149‑1 (MQ=39) cACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 4:135289/1‑149 (MQ=39) gATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:94987/1‑149 (MQ=39) gATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc > 1:394988/1‑108 (MQ=25) tgaaCGAGT‑CGGTCGAGACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCTTGACCCTGAGCTACCCTGCCCAGACGCCTGTAACCGTGAACGTGTCCAACGGCCAAACGa < 4:150533/139‑1 (MQ=14) aCGACT‑CGGTCGACACCACCACCGCGACCCTGACGCCGAGCCCGTCGGTCACCGAACGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTCCCCAGACGCCCGAAACCGTGAACCTGTCCAACGCCCAAACGATTACCGTTGaa > 7:129209/1‑149 (MQ=14) cGACT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAg > 6:127597/1‑149 (MQ=255) cT‑CGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCTGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 7:69656/149‑1 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg < 2:329981/147‑1 (MQ=255) gTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa > 2:374046/1‑148 (MQ=39) cGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa > 7:281138/1‑149 (MQ=255) cGACACCACAACAGCGACCCTGTCGGCGAGACCGTCGGGCACCGAACGCGGCGAGATCACATTCACACTCTCCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 3:138487/149‑1 (MQ=11) accactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCAAAACGATTACCGTTGAAGCGGGTAAAAcc > 1:173182/1‑147 (MQ=255) cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa > 2:177522/1‑143 (MQ=255) cactaccGCGACCCTGACGGCGACCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg < 5:382816/149‑1 (MQ=255) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCcgg > 1:247634/1‑138 (MQ=12) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCcgg < 2:247634/138‑1 (MQ=12) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCcggc > 1:389201/1‑137 (MQ=9) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCcggc < 2:389201/138‑2 (MQ=9) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 8:275799/1‑149 (MQ=39) | CGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGA‑‑ATCCGACCCCGGCTCAGA‑‑CCACGATCAACGACT‑CGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG > NC_002947/195487‑195780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |