| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,977,148 | C→A | 5.3% | A271E (GCG→GAG) | PP_1770 → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,977,148 | 0 | C | A | 5.3% | 279.9 / 3.8 | 85 | A271E (GCG→GAG) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (42/38); new base A (2/3); total (44/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01 | |||||||||||
TTCCGGTACGCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAAC > NC_002947/1977000‑1977288 | ttCCGGTACGCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGcgcgacgc > 3:228267/1‑149 (MQ=255) gTACGCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCg < 7:122918/149‑1 (MQ=255) tACGCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGc < 4:262699/149‑1 (MQ=255) cGCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCt < 2:213151/148‑1 (MQ=255) cGCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCGCGTCGCGCAGGGCGTCGAGATCACt < 4:290456/148‑1 (MQ=255) gCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGCGATCGCGTCGCGCAGGGCGTCGAGATCACTgc < 3:174599/149‑2 (MQ=38) cTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTg > 6:346594/1‑147 (MQ=255) cGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGTGCGACGCGATCGCTGAAg < 2:75311/147‑1 (MQ=255) cGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAggg < 5:346594/149‑1 (MQ=255) cGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGCGATCGCGTCGCGCAGGGCGTCGAGATCACTgcgaaa < 2:388730/149‑6 (MQ=37) ggtgggtTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAACCCGTCCACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAggg < 1:330684/149‑1 (MQ=255) cgcgATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGAt < 3:187872/128‑1 (MQ=255) cgcgATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGAt > 4:187872/1‑128 (MQ=255) cgcgATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCa < 5:411648/149‑1 (MQ=255) gcgATTTCACAAGAATCGCCGGCAGCGATCCTACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCg < 8:67124/129‑1 (MQ=255) gcgATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCg > 7:67124/1‑129 (MQ=255) gcgATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGAACCA‑g < 8:165414/149‑1 (MQ=255) gATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑gct > 2:37879/1‑149 (MQ=255) acaAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGGGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTgg < 7:50336/148‑1 (MQ=255) acaAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTgg < 2:401949/148‑1 (MQ=255) caAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGgt < 2:183615/149‑1 (MQ=255) aaGAATCGCCGGCAGCTATCCGACCATGTGGCATGACATCTTCGTCGCCTA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTTATCTCGACGCCCTGCGCGACGCTATCGCTGAAGGGGATGGGCACCA‑GCTGCtgtgtg < 4:228267/149‑1 (MQ=255) aaGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGgtg > 8:259627/1‑149 (MQ=255) tCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCGCTCTGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTAt < 1:325221/149‑1 (MQ=255) tCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTc < 8:112014/149‑1 (MQ=255) ccGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCAcc > 7:132881/1‑149 (MQ=255) ccGGCAGCGATCCGACAATGTGGCATGACATCTTCCTAGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATATCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACAA‑GCTGCTGGGTGTATTCAcc > 2:175206/1‑149 (MQ=255) gCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCcgc > 5:318061/1‑149 (MQ=255) cAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGAATACAcccagc < 7:105814/149‑4 (MQ=255) gCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCa > 7:229584/1‑149 (MQ=255) ccGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGt > 3:55864/1‑149 (MQ=255) gACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTg > 2:314335/1‑149 (MQ=255) aCCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTTTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGc < 6:48155/149‑1 (MQ=255) aCCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGc < 1:37879/149‑1 (MQ=255) cATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCAACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGccc > 5:46695/1‑149 (MQ=255) tgtgGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTAt > 8:1176/1‑126 (MQ=255) tgtgGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTAt < 7:1176/126‑1 (MQ=255) tgtgGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCcgc < 4:55864/149‑1 (MQ=255) cATGACAACTTCCTCTACAA‑CCG‑CGACGCTGTCCTGCGAACGCATGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCTACGCGATAGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGACCGCGAGCa > 6:284917/1‑149 (MQ=255) aCATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCAttt < 8:229584/148‑1 (MQ=255) aCATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCAttt < 8:132881/148‑1 (MQ=255) aCATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCAttt < 6:90615/148‑1 (MQ=255) cATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCa < 6:205821/149‑1 (MQ=255) cTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGt > 8:302894/1‑148 (MQ=255) ttCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTa > 2:377023/1‑148 (MQ=255) ttCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTa > 6:61136/1‑148 (MQ=255) ccTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTa > 2:400580/1‑109 (MQ=255) ccTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTa < 1:400580/109‑1 (MQ=255) ccTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTaaa < 6:291095/148‑1 (MQ=255) cTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTaaaa < 3:112247/148‑1 (MQ=255) tCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATc > 1:23911/1‑149 (MQ=255) gCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCt > 1:291912/1‑149 (MQ=255) ccAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCACTCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCt < 1:314335/149‑1 (MQ=255) ccAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTg < 4:363720/149‑1 (MQ=255) a‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGC‑GGGTGAATACAcccag < 8:276735/109‑3 (MQ=255) a‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGC‑GGGTGAATACAcccag > 7:276735/1‑107 (MQ=255) a‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGAGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGcc > 1:172829/1‑149 (MQ=255) gCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGc < 6:318061/149‑1 (MQ=255) tCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAt < 2:23911/149‑1 (MQ=255) cTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAtgt > 3:95193/1‑149 (MQ=255) cTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAtgt > 3:318269/1‑149 (MQ=255) aCGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGc > 3:185614/1‑149 (MQ=255) cTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTAt < 2:404139/149‑1 (MQ=255) ttGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTAt > 1:252541/1‑148 (MQ=255) gATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATg < 7:259627/147‑1 (MQ=255) gATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGaa > 5:302676/1‑149 (MQ=255) aTACATTTCG‑‑CAGTGATCTCGACGCCCTTCGCGACGCGATCGCTGAAGGGGATGTGCACCA‑GCTGCTGTGTGTATTCACCCGAGCACGGGTTGCCAGAGAGCATTTCAGTAAAATCCTGGCACGCCGTGACTATGTGGACGCTATGAAc > 4:247239/1‑149 (MQ=255) aTACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAAc > 1:163170/1‑149 (MQ=255) aTACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAAc < 6:302676/149‑1 (MQ=255) tACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACg > 7:267616/1‑149 (MQ=255) aTTTCG‑‑CAGTGATCTCGCCGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGcc > 6:57891/1‑148 (MQ=255) aTTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGcc > 1:257371/1‑148 (MQ=255) tttCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGACCGCCaa > 6:201779/1‑149 (MQ=255) tccccttcAGCGATCGCGTCGCGCAGGGCGTCGAGATCACTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGc > 2:60052/8‑148 (MQ=37) tCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAAc < 8:68951/148‑1 (MQ=255) tCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAAc > 7:66664/1‑148 (MQ=255) g‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGAt > 7:344068/1‑149 (MQ=255) tGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGa > 4:139762/1‑149 (MQ=255) tcGACGCCCTGCGGGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGAGTTTc > 4:58561/1‑149 (MQ=255) tcGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTc > 6:78880/1‑149 (MQ=255) tcGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTc > 7:268928/1‑149 (MQ=255) tcGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTc > 7:330997/1‑149 (MQ=255) cGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTc > 4:341341/1‑148 (MQ=255) gACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTc > 8:26282/1‑147 (MQ=255) gACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTc < 8:267616/147‑1 (MQ=255) cTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGccc > 6:342430/1‑148 (MQ=255) cgcgacgcgaTCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAAc < 1:377023/148‑1 (MQ=255) | TTCCGGTACGCTGCGGGTGGGTTCCGCGATTTCACAAGAATCGCCGGCAGCGATCCGACCATGTGGCATGACATCTTCCTCGCCAA‑CCG‑CGACGCTGTCCTGCGCACGCTTGATACATTTCG‑‑CAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCA‑GCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAAC > NC_002947/1977000‑1977288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |