Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,007,238 G→A 5.4% L42L (CTG→TTG)  PP_1790 ← acylneuraminate cytidylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,007,2380GA 5.4% 286.5 / 3.8 93L42L (CTG→TTG) PP_1790acylneuraminate cytidylyltransferase
Reads supporting (aligned to +/- strand):  ref base G (36/51);  new base A (2/3);  total (38/55)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

ACTGGTCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGCTTTGGC  >  NC_002947/2007091‑2007386
                                                                                                                                                   |                                                                                                                                                    
aCTGGTCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGt                                                                                                                                                     <  2:310021/149‑1 (MQ=255)
    gTCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGc                                                                                                                                                  <  5:35679/148‑1 (MQ=255)
    gTCAGTGCTGGTCTGGCTGGAAGATAGGGCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAACCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGGGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGc                                                                                                                                                  <  4:359364/148‑1 (MQ=255)
     tCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCtt                                                                                                                                                <  8:221332/149‑1 (MQ=255)
     tCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCtt                                                                                                                                                <  7:241384/149‑1 (MQ=255)
          gCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACt                                                                                                                                           >  5:151156/1‑149 (MQ=255)
           cTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACtt                                                                                                                                          <  5:301211/149‑1 (MQ=255)
           cTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAACTGCTTCaagca                                                                                                                                          <  6:414435/149‑4 (MQ=255)
               tCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGAGTAGTCAAGGATGCTTACGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGAtt                                                                                                                                      <  7:159304/149‑1 (MQ=255)
                    ctggAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTtcaat                                                                                                                                 <  6:373974/149‑1 (MQ=255)
                       taaGATTGGTCTTCTCGTCGCTTATTATGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTGAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTtcaatcaa                                                                                                                              <  8:103818/148‑1 (MQ=255)
                       gAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTtcaatcaa                                                                                                                              <  8:98092/149‑1 (MQ=255)
                       gAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTtcaatc                                                                                                                                <  2:36717/147‑1 (MQ=255)
                        aaGATAGGTCTTCTCGTCGCTTTTGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAg                                                                                                                             <  3:49366/149‑1 (MQ=255)
                             aGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGAtt                                                                                                                                      <  3:13834/135‑1 (MQ=255)
                             aGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGAtt                                                                                                                                      >  4:13834/1‑135 (MQ=255)
                             aGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGaa                                                                                                                        >  6:302366/1‑149 (MQ=255)
                             aGGTCTTCTCCACGCTTATGAAGAATGATATTATTATTTTGAAGCCATGAGGCGTAGTCAAGCATGCTATCGTCTTATGAGCTCATTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTTCTTCAACTTCATATCAATCAATCCGa                                                                                                                         >  6:231121/1‑148 (MQ=255)
                                tcttctCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAAt                                                                                                                       >  1:194030/1‑147 (MQ=255)
                                    ctcGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTgg                                                                                                                 >  8:78603/1‑149 (MQ=255)
                                     tagtgggttATGAAGTTTGTTTTTATTATTTTGAAGCGATTTGTCGTAGTCAAGGTTGCTTTCTTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTgg                                                                                                                 <  7:193822/141‑1 (MQ=255)
                                       gtcgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTgg                                                                                                                 <  4:97201/146‑1 (MQ=255)
                                       gtcgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTAAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTTgccg                                                                                                              <  8:286578/149‑1 (MQ=255)
                                         cgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCTTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTtcaat                                                                                                                                 <  6:28799/128‑1 (MQ=255)
                                         cgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTAAACTTGATTtcaat                                                                                                                                 >  5:28799/1‑128 (MQ=255)
                                            ttATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTtcaat                                                                                                                                 >  6:62203/1‑125 (MQ=255)
                                            ttATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTtcaat                                                                                                                                 <  5:62203/125‑1 (MQ=255)
                                               tGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACTATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATgg                                                                                                      <  8:255899/149‑1 (MQ=255)
                                                gAAGTTTGATTTTATTATTTTGAAGCGATGCGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGgcc                                                                                                               <  8:132946/139‑1 (MQ=255)
                                                gAAGTTTGATTTTATTATTTTGAAGCGATGCGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGgcc                                                                                                               >  7:132946/1‑139 (MQ=255)
                                                gAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCg                                                                                                                    <  4:253907/134‑1 (MQ=255)
                                                gAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCg                                                                                                                    >  3:253907/1‑134 (MQ=255)
                                                gAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATgg                                                                                                      <  2:406334/148‑1 (MQ=255)
                                                gAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGt                                                                                                     >  4:4194/1‑149 (MQ=255)
                                                 tattttGATTTTTTTATTTTGAAGCTATGATGAGTAGGCATGGATGCTTTCTTCGTTGGTGCTCAGTACGATGTAATCTACAGCGTCTGCTTGAAGCTTTTGGTTCTACTTGATTTTAATCAAGCCGAATTCGTGGCCGCGAAATGGt                                                                                                     <  5:231121/145‑1 (MQ=255)
                                                 aaGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGt                                                                                                     <  5:290458/148‑1 (MQ=255)
                                                  tgtttatttttATAATTTT‑AATCGTTGATGCCTATTCAATGATGCTTTGGTCCTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGtttt                                                                                                  <  5:225201/142‑1 (MQ=255)
                                                  aGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGttt                                                                                                   <  7:162443/149‑1 (MQ=255)
                                                   gTTTGATTTTATTATTTTTAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGtttt                                                                                                  <  7:255168/149‑1 (MQ=255)
                                                    tttGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTta                                                                                                 >  1:153372/1‑149 (MQ=255)
                                                       gATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTtata                                                                                               <  3:72917/148‑1 (MQ=255)
                                                         ttttATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATAttt                                                                                            >  5:225162/1‑149 (MQ=255)
                                                              ttattTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTAtt                                                                                       >  8:162478/1‑149 (MQ=255)
                                                              ttattTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTAtt                                                                                       >  3:119764/1‑149 (MQ=255)
                                                                attTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGTATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTc                                                                                      <  2:253908/148‑1 (MQ=255)
                                                                attTTGAAGCGATGAGGCGTAGGCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTc                                                                                      <  4:302591/148‑1 (MQ=255)
                                                                 ttttGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATAtttt                                                                                           >  8:133069/1‑142 (MQ=255)
                                                                 ttttGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATAtttt                                                                                           <  7:133069/142‑1 (MQ=255)
                                                                  tttGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCgg                                                                                    >  7:15748/1‑148 (MQ=255)
                                                                    tGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAAt                                                                                 >  3:176029/1‑149 (MQ=255)
                                                                     gAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAAt                                                                                 <  8:15748/148‑1 (MQ=255)
                                                                               ggCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGc                                                                      <  7:78603/149‑1 (MQ=255)
                                                                                gCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGt                                                                             >  8:290959/1‑141 (MQ=255)
                                                                                gCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGt                                                                             <  7:290959/141‑1 (MQ=255)
                                                                                   tAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCttt                                                                  <  4:359339/149‑1 (MQ=255)
                                                                                    aGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCtttt                                                                 >  1:360952/1‑149 (MQ=255)
                                                                                     gTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCtttt                                                                 <  3:213840/148‑1 (MQ=255)
                                                                                            aTGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCggcaggg                                                         <  6:225162/149‑1 (MQ=255)
                                                                                                tttCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCggcagggcag                                                      >  7:324884/1‑148 (MQ=255)
                                                                                                tttCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCggcagggcag                                                      >  7:270690/1‑148 (MQ=255)
                                                                                                   cgtcgtTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGaaa                                                   <  3:4194/148‑1 (MQ=255)
                                                                                                    gtcgtTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAac                                                 <  2:360952/149‑1 (MQ=255)
                                                                                                              cTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTc                                                                           <  3:229855/113‑1 (MQ=255)
                                                                                                              cTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTc                                                                           >  4:229855/1‑113 (MQ=255)
                                                                                                                cAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGtttttt                                     <  2:194030/149‑1 (MQ=255)
                                                                                                                 aGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGtttttt                                     >  1:213840/1‑148 (MQ=255)
                                                                                                                 aGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGtttttt                                     <  8:270690/148‑1 (MQ=255)
                                                                                                                 aGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGttttt                                      <  5:302366/147‑1 (MQ=255)
                                                                                                                   tACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCat                                  <  6:151156/149‑1 (MQ=255)
                                                                                                                   tACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCa                                   >  1:94748/1‑148 (MQ=255)
                                                                                                                     cGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCatat                                <  8:324884/149‑1 (MQ=255)
                                                                                                                      gATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatt                               >  6:14313/1‑149 (MQ=255)
                                                                                                                      gATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatt                               >  7:286296/1‑149 (MQ=255)
                                                                                                                       aTGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatt                               >  3:178231/1‑148 (MQ=255)
                                                                                                                        tGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATattt                              >  4:165084/1‑148 (MQ=255)
                                                                                                                           aaTCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatttcat                           <  7:162478/148‑1 (MQ=255)
                                                                                                                            aTCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatttcatt                          >  2:308815/1‑148 (MQ=255)
                                                                                                                             tCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCa                                   <  6:102056/138‑1 (MQ=255)
                                                                                                                             tCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCa                                   >  5:102056/1‑138 (MQ=255)
                                                                                                                               aaCAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAg                      >  3:114241/1‑149 (MQ=255)
                                                                                                                                  aGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTgg                   <  4:119764/149‑1 (MQ=255)
                                                                                                                                      tCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCTGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCa               >  7:136855/1‑149 (MQ=255)
                                                                                                                                       caagttGAAGCAACTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTgg                   >  5:361212/5‑144 (MQ=255)
                                                                                                                                       caagttGAAGCAACTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTgg                   <  6:361212/140‑1 (MQ=255)
                                                                                                                                        tGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCAAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCAt              >  1:313683/1‑148 (MQ=255)
                                                                                                                                        aagttGAAGCAACTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatttca                            >  7:195438/4‑134 (MQ=255)
                                                                                                                                        aagttGAAGCAACTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatttca                            <  8:195438/131‑1 (MQ=255)
                                                                                                                                          cTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATaaa           >  2:67032/1‑149 (MQ=255)
                                                                                                                                             gAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGc        >  1:408684/1‑149 (MQ=255)
                                                                                                                                               aGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGCtt      <  2:94748/149‑1 (MQ=255)
                                                                                                                                                gCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGCttt     <  8:136855/149‑1 (MQ=255)
                                                                                                                                                gCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGCttt     <  5:364498/149‑1 (MQ=255)
                                                                                                                                                gCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGCttt     <  7:357979/149‑1 (MQ=255)
                                                                                                                                                   gTTGCTTCAACTTGATTTCAATCAAGCAGAATTCGTTGACTCCAAATTGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGCTTTGGc  <  8:179713/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
ACTGGTCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACGCTTTGGC  >  NC_002947/2007091‑2007386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑