| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 5.5% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 5.5% | 843.3 / 22.1 | 291 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (137/137); new base T (7/9); total (144/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 293 total aligned reads displayed.
CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA > NC_002947/196912‑197179 | ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg < 3:191327/149‑1 (MQ=31) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGc < 7:268348/149‑1 (MQ=32) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 1:73943/149‑1 (MQ=32) tcGCCGGTGACAGTGACCCTGTCCAACGTCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTACAGACCCCGGCTAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 2:36794/147‑1 (MQ=12) ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt < 7:70766/149‑1 (MQ=35) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:195888/149‑1 (MQ=34) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCAAGAACGCCACAGGCGGTAATTTCGa < 5:113302/149‑1 (MQ=21) cAGTGACCCTGTCCAACGGCCATTCGATTATCGTTGAAGCCGGCAAGACACAGGGTAGCTTCGATTTCCTGACGCCGGCGATT‑‑GACG‑‑TGTTCAACAAAGGTTGTACCGTCTGCGTCAACATCGAGAACGCCTATGGCGGTAATTTCGa < 4:12114/148‑1 (MQ=2) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 4:56409/149‑1 (MQ=33) cgacctccTGTCCAACGGCCACACCATTCCCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 5:332003/142‑1 (MQ=255) cgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGACTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:115798/148‑1 (MQ=9) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 7:297568/148‑1 (MQ=32) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 7:114707/148‑1 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa < 8:126909/149‑1 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGCCCCAGGGCAGCGTCGATTTCCAGACACCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGCCCGTCCGCGTCACCCTCCTGCACGCCACAGGCGGTGATTTCGAg > 6:332003/1‑141 (MQ=11) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 3:122265/149‑1 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 5:50346/149‑1 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 6:395754/1‑148 (MQ=32) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATAGGACG‑‑TCTACAACAACGGTTCGACCGTCAGCTTCACAATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 1:324805/1‑148 (MQ=11) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGCCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGAc > 4:284879/1‑149 (MQ=21) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 5:219014/149‑1 (MQ=34) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGccc > 6:372975/1‑149 (MQ=21) aCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcccc > 1:387116/1‑149 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAg > 3:332519/1‑149 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 4:319741/1‑148 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACACCGAATCCGACCCCGGCTCAGAcc > 7:125178/1‑149 (MQ=37) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 6:329375/114‑1 (MQ=32) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 3:125589/127‑1 (MQ=32) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 1:208404/1‑148 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 2:302545/148‑1 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGCCCCCGa > 8:153536/1‑149 (MQ=255) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc < 7:159478/138‑1 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa < 2:254011/149‑1 (MQ=37) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TTTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa > 3:398762/1‑148 (MQ=37) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 2:387116/149‑1 (MQ=37) ccGGCAAGACCCAGCGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATc < 7:344274/149‑1 (MQ=37) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACT‑‑TCTACAACAACGGTTCGACCGTCAGCATAACCATCCAGAACGCCACAGGAGGTAATTACGCGCAACTGACCCCGAATCCGACCCCGGCTCAGCCCACGAACAACGAca > 6:355633/1‑148 (MQ=11) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACt > 8:241852/1‑149 (MQ=35) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg > 3:146088/1‑149 (MQ=34) cccAGGGCAGCGTCGATTTACAGACCCCGGCGAAT‑‑GACG‑‑CCTACACCACCGGCTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAGCATCGACTCg < 8:61267/149‑1 (MQ=11) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 4:227609/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 4:30064/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTAGAGCAACTGACCCCGAATCCGACCCCGCCTCAGACAACGATCAACGACACgg > 6:105137/1‑149 (MQ=255) ccAGGGCAGCGTCGATTTCAAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGCTAATTTCGAGCAACTGACCACGAATAAGACCCCGGCACAGAACACGATCAACGACACgg > 4:187702/1‑149 (MQ=11) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACC‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 4:84890/149‑1 (MQ=21) aGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCGACGACTCGGTc > 1:21928/1‑149 (MQ=21) gCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 3:27234/149‑1 (MQ=35) cgcaggTCGATGTCGCGTCCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 1:54601/144‑1 (MQ=11) cAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATg > 6:53376/1‑149 (MQ=35) aGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGacac < 4:146088/149‑4 (MQ=17) aGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 2:208404/149‑1 (MQ=37) gTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGacacca > 1:141556/1‑143 (MQ=11) gTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac > 5:134752/1‑149 (MQ=39) gTCGAGTTCCAGACCCCGGCGAAT‑‑TACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac < 8:312269/149‑1 (MQ=255) gATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 7:179071/1‑122 (MQ=35) tttCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcg > 8:186918/1‑149 (MQ=39) ttCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGCCCACGATCAACGACTCGGTCGATGCCACCACcgc > 5:257797/1‑149 (MQ=255) tCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATAGAGAACGCCACAGGCGGGAATTACGAGCAACTGACCCCGAATCCGACCCCGGCTCAGCCCACGATCAACGCCTCGGTCGAAGCCACCACcgcg > 7:362319/1‑149 (MQ=11) ccAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:43550/81‑1 (MQ=33) ccAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGa > 1:82418/1‑149 (MQ=39) ccAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCCACCGTCAGCGTCACCATAGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGATCCCACCACcgcca > 1:188108/1‑147 (MQ=255) cAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 5:266964/110‑1 (MQ=35) cAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa > 6:266964/1‑110 (MQ=35) cAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc < 5:296701/149‑1 (MQ=39) cAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc > 4:353324/1‑149 (MQ=39) gACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGATCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc < 7:83461/149‑1 (MQ=255) aCCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGTATCCGACCCCGGCTCAGACCACGATCaa < 1:231338/119‑1 (MQ=25) aCCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa > 2:231338/1‑119 (MQ=35) cccGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCTATGCCACCACCGCGACCCTGa < 3:60272/149‑1 (MQ=255) cGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCTGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 6:208604/143‑1 (MQ=255) cGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 5:208604/1‑143 (MQ=21) cGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa > 8:288673/1‑103 (MQ=35) cGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 7:288673/103‑1 (MQ=35) ggCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 1:2775/1‑146 (MQ=39) gCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGACCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 2:46004/149‑1 (MQ=255) gAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 3:30064/149‑1 (MQ=38) aT‑‑GACG‑‑TCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc < 8:277723/149‑1 (MQ=21) t‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGcc > 3:108551/1‑149 (MQ=37) gACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACACGGTCGATGCCACCACCGCGACCCTGACGGCGAGccc > 2:279686/1‑149 (MQ=37) cG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 3:90770/1‑115 (MQ=32) cG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca < 5:164551/122‑1 (MQ=37) cG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACAACGATCAACGACTCGGTCGATGcca > 6:164551/1‑122 (MQ=37) g‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTc > 5:419431/1‑149 (MQ=37) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATg > 4:128496/1‑115 (MQ=34) acaacaACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 8:298951/1‑148 (MQ=21) caacacCGGTTCGACCGTCAGCGTCACCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGACCCCTAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 2:193371/145‑1 (MQ=255) caacaaCGCTGCCACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAGCCCGATTGCGACCGCGGCTCAGACCACTATCAACGACTCGGTCGATGCCACCACTGCGACCCTGACGGCGAGCCCGTCGGTc < 6:134752/148‑1 (MQ=11) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:143722/56‑1 (MQ=35) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGt < 1:162405/142‑1 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 1:263435/1‑149 (MQ=37) acaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 4:192286/1‑149 (MQ=21) acaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 5:362873/149‑1 (MQ=21) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 1:292238/1‑148 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 6:378160/1‑148 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 4:401083/1‑148 (MQ=37) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc > 6:221252/1‑149 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 3:228866/149‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:6361/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:380963/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 7:241852/149‑1 (MQ=37) | CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACG‑‑TCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTA > NC_002947/196912‑197179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |