| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,089 | T→C | 11.1% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,089 | 0 | T | C | 11.1% | 891.9 / 81.8 | 351 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (162/150); new base C (19/20); total (181/170) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.08e-01 | |||||||||||
Only 100 of 354 total aligned reads displayed.
ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTG > NC_002947/196941‑197236 | gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 6:257873/1‑148 (MQ=34) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATAGGACGTCTACAACAACGGTTCGACCGTCAGCTTCACAATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 1:324805/1‑148 (MQ=11) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGCCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGAc > 4:284879/1‑149 (MQ=21) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGccc > 6:372975/1‑149 (MQ=21) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc > 7:356576/1‑149 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg > 1:382310/1‑144 (MQ=37) gTTGAAGCTGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAA‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 8:218425/1‑149 (MQ=255) gTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc < 7:65952/149‑1 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 4:319741/1‑148 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACACCGAATCCGACCCCGGCTCAGAcc > 7:125178/1‑149 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 5:211553/1‑148 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGCCCCCGa > 8:153536/1‑149 (MQ=255) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc < 7:159478/138‑1 (MQ=37) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTTTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa > 3:398762/1‑148 (MQ=37) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 2:387116/149‑1 (MQ=37) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATc < 2:229176/149‑1 (MQ=37) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTc > 4:259432/1‑149 (MQ=34) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg < 6:99800/149‑1 (MQ=34) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg > 3:146088/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 4:30064/1‑149 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 1:206821/1‑149 (MQ=34) gCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GAt < 3:27234/149‑1 (MQ=35) cgcaggTCGATGTCGCGTCCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTC‑GAt < 1:54601/144‑1 (MQ=11) gTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGccac > 5:134752/1‑149 (MQ=39) aTTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATg < 4:134981/141‑1 (MQ=35) cAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 5:266964/110‑1 (MQ=35) cAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGAc > 4:353324/1‑149 (MQ=39) cAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGAc < 5:296701/149‑1 (MQ=39) aGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCCGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGAcc < 5:219065/149‑1 (MQ=255) aGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGAcc < 2:324805/149‑1 (MQ=39) gACCCCGGCGAAT‑‑GACGTCTACAACAACGGATCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGAccc < 7:83461/149‑1 (MQ=255) cccGTCGAAT‑‑GACGTCTACAACAACGGTTCGAACGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCTAGCAACTGAACCCGAATCCGAACACGGATCAGACCACGATCAACGACTCGGTA‑GATGCCACCACCGCCACCCTGa > 2:88156/1‑149 (MQ=14) cccGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGa > 5:378660/1‑149 (MQ=21) cccGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑TATGCCACCACCGCGACCCTGa < 3:60272/149‑1 (MQ=255) cGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACg > 1:281872/1‑149 (MQ=39) ggCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGa < 2:2775/146‑1 (MQ=39) ggCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACg > 6:198803/1‑148 (MQ=39) cGAAT‑‑GACGTCTTCAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGTGCAACTGACCCAGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCg < 7:382968/149‑1 (MQ=255) gAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGa < 3:30064/149‑1 (MQ=38) aaT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAg < 5:45517/149‑1 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 4:90770/115‑1 (MQ=32) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGt > 1:294665/1‑149 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACAACGATCAACGACTCGGTC‑GATGcca > 6:164551/1‑122 (MQ=37) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 6:400562/1‑149 (MQ=37) caacacCGGTTCGACCGTCAGCGTCACCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGACCCCTAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 2:193371/145‑1 (MQ=255) caacaaCGCTGCCACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAGCCCGATTGCGACCGCGGCTCAGACCACTATCAACGACTCGGTC‑GATGCCACCACTGCGACCCTGACGGCGAGCCCGTCGGTc < 6:134752/148‑1 (MQ=11) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 1:19055/1‑149 (MQ=37) acaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 4:192286/1‑149 (MQ=21) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 2:51234/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAg > 3:121937/1‑134 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:276384/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 4:6210/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 4:387678/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGa < 5:105137/149‑1 (MQ=37) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 6:378660/148‑1 (MQ=21) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGAcc > 1:152865/1‑115 (MQ=39) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGAcc < 2:152865/115‑1 (MQ=39) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 1:264578/149‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 7:294083/149‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 7:241852/149‑1 (MQ=37) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCCCCGCGACCATGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 6:299710/1‑148 (MQ=255) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc < 5:338305/149‑1 (MQ=38) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTaca > 8:282708/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg > 8:302612/1‑129 (MQ=35) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 7:302612/129‑1 (MQ=35) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 3:81831/1‑149 (MQ=37) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 5:391604/1‑148 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 8:316290/1‑127 (MQ=35) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc < 3:227609/149‑1 (MQ=17) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGa < 2:7944/148‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGa < 3:192286/148‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 7:224440/126‑1 (MQ=35) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCt > 3:372274/1‑149 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 3:320631/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 6:419431/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 7:276384/149‑1 (MQ=37) acaGTCGGTAATATCGAGATACTGACACCGAACCCTACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAACCTGAGCaa < 8:188973/149‑1 (MQ=11) acaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCaa > 7:279275/1‑149 (MQ=17) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 4:108551/149‑1 (MQ=35) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 6:390052/1‑118 (MQ=32) gCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt > 6:214824/1‑149 (MQ=21) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc > 1:237742/1‑149 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 8:12415/149‑1 (MQ=34) aTTTCGATCAACTGACCCCGAATCCGACCACGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGATCAATCCTGCCCAg < 5:355633/149‑1 (MQ=255) cGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGGGTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACg > 1:110299/1‑149 (MQ=255) cGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 5:179312/126‑1 (MQ=35) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 7:339426/149‑1 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 7:186918/149‑1 (MQ=34) aGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 2:217442/149‑1 (MQ=21) tcAACTGACCCCGAATCCGACCCCGGCTCAGACCTCTATCTACGACTCGGTC‑GATGCCACCACCGCTACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAGCGTGACCCTGAGCAATCCTGCCCAGACGc < 1:88156/145‑1 (MQ=11) cAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg > 2:304281/1‑148 (MQ=34) aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTaa < 6:331210/149‑1 (MQ=35) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGccc > 1:222193/1‑132 (MQ=34) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 5:413167/130‑1 (MQ=35) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGc < 8:376063/129‑1 (MQ=35) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 2:252121/149‑1 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAAAGCCTCGGTC‑GATGCCACAACCGCGACCCTGAATGAGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAACTACACCGTGACCCTGAGCAATCCTGCCCAGCCGCCGGTAACCGTGa > 6:349070/1‑149 (MQ=14) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc > 6:84401/1‑149 (MQ=39) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCt < 8:293890/149‑1 (MQ=39) aTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTg < 8:245158/149‑1 (MQ=38) | ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTC‑GATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTG > NC_002947/196941‑197236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |