| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,469,844 | G→A | 12.2% | intergenic (+13/+22) | vacJ → / ← PP_2164 | lipoprotein VacJ/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,469,844 | 0 | G | A | 12.2% | 236.5 / 17.5 | 90 | intergenic (+13/+22) | vacJ/PP_2164 | lipoprotein VacJ/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (38/41); new base A (4/7); total (42/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
CCTGATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTC > NC_002947/2469696‑2469991 | ccTGATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTgg < 6:370444/149‑1 (MQ=255) tGATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTgggg > 7:138070/1‑149 (MQ=255) gATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATT‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGc > 2:294198/1‑149 (MQ=255) gATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTggg < 5:59697/147‑1 (MQ=255) gATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTggg > 6:59697/1‑147 (MQ=255) gATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGc > 5:35070/1‑149 (MQ=255) aTCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGcc > 1:221649/1‑149 (MQ=255) acCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAg > 4:130927/1‑149 (MQ=255) aGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGGTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGc‑‑cccag < 5:301748/149‑5 (MQ=255) aGCCTGCTCTCGGCAGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGc‑‑cccag < 7:351981/149‑5 (MQ=255) gCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCggg < 2:221649/149‑1 (MQ=255) ccTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGt < 6:35070/149‑1 (MQ=255) cTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGtt > 6:187031/1‑149 (MQ=255) cTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGtt < 3:112919/149‑1 (MQ=255) ctctCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGC‑‑CCCAGGTTCac < 5:175709/149‑2 (MQ=255) tcGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAAt < 5:264365/147‑1 (MQ=255) tcGCCCGAAAAGCTGATTCAGGGTGACAAGTACATCCTCATTCGCAATGCCTACCTGCAAAACCTCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCTAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAAt < 3:272812/147‑1 (MQ=255) ggCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGCCACGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CGCGGGTTCaa < 1:115962/146‑1 (MQ=255) ggCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGC‑‑CCCAGGTTCacagat < 4:60701/148‑6 (MQ=38) ggCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGC‑‑CCCAGGTTCacagat < 7:92505/148‑6 (MQ=38) gAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGc > 1:227113/1‑148 (MQ=255) gATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCAt < 1:50645/137‑1 (MQ=255) gATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCAt > 2:50645/1‑137 (MQ=255) gATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCg > 4:82351/1‑149 (MQ=255) aTTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATcc < 2:279730/147‑1 (MQ=255) aTTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATcc < 2:285323/147‑1 (MQ=255) aGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGcc > 7:63784/1‑149 (MQ=255) ggTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCg < 5:296505/149‑1 (MQ=255) gACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCaaa > 6:395587/1‑106 (MQ=255) gACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCaaa < 5:395587/106‑1 (MQ=255) aaGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTc > 2:325529/1‑149 (MQ=255) aCAACTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAACGTGAACGATG‑‑GCGACGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTctgct > 3:326756/1‑149 (MQ=255) cATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTctgct < 6:143287/148‑1 (MQ=255) atcatcCTTCGCAATGCCTCCCTGCAAACCCGCGAGTTCAAGGGGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCtgctgc < 4:212939/149‑1 (MQ=255) aTCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTctgct < 6:319281/147‑1 (MQ=255) aTCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTctgct > 5:319281/1‑147 (MQ=255) tCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTgcc > 4:260736/1‑149 (MQ=255) aTTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCtgctgc > 2:275743/1‑143 (MQ=255) aTTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCtgctgc < 1:275743/143‑1 (MQ=255) aTTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTgcccgccc < 3:82351/149‑1 (MQ=255) aTTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTgcccgccc > 4:276937/1‑149 (MQ=255) ttCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGcccgcccg > 5:130776/1‑149 (MQ=255) cGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCgg < 2:365550/148‑1 (MQ=255) gCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATT‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCATTGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑t < 1:294198/149‑1 (MQ=255) gCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑t > 1:393510/1‑149 (MQ=255) cAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑Tg > 5:241006/1‑149 (MQ=255) cAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑Tg > 3:341531/1‑149 (MQ=255) aTGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGt < 4:136010/149‑1 (MQ=255) cTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCgg > 8:43160/1‑148 (MQ=255) ccTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCa < 3:276937/147‑1 (MQ=255) cTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATc < 4:331411/149‑1 (MQ=255) gCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCa > 2:236003/1‑149 (MQ=255) cAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCAt < 2:393510/149‑1 (MQ=255) aaaCCGCGAGTTCTTGGTGTAGGAGG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACGTGGGGGGGCATTGCGGC‑‑CGCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGGCCGCCCGGC‑‑TGGTCGGCAATCCATAc < 4:326756/149‑1 (MQ=255) aaaCCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATAc < 8:63784/149‑1 (MQ=255) aaaCCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGACAGAATCCGCAGCCCGAACTTCTGCTGCCCGCACGGC‑‑TGGTCGGCAATCCATAc > 7:221239/1‑149 (MQ=255) aGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCgg < 5:187031/149‑1 (MQ=255) ttCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTg > 4:312133/1‑149 (MQ=255) aaGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCGGCTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGc > 1:120726/1‑149 (MQ=255) aaGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTg < 8:312011/149‑1 (MQ=255) aaGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTg < 6:241006/149‑1 (MQ=255) aaGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTg < 1:311536/149‑1 (MQ=255) tGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCAt > 4:223068/1‑149 (MQ=255) tGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCAt < 3:260736/149‑1 (MQ=255) aaGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATg < 1:394289/148‑1 (MQ=255) ggATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAg > 5:281427/1‑149 (MQ=255) tG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGccc < 1:236003/149‑1 (MQ=255) gTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAgc > 6:87414/1‑149 (MQ=255) tCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAgcg > 3:13500/1‑149 (MQ=255) tCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAgcg > 8:51534/1‑149 (MQ=255) gAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCa < 7:223436/144‑1 (MQ=255) gAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCa > 8:223436/1‑144 (MQ=255) cTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGAc > 6:277423/1‑149 (MQ=255) cTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGAc > 2:297177/1‑149 (MQ=255) ttCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATg > 8:10650/1‑50 (MQ=255) ttCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATg < 7:10650/50‑1 (MQ=255) ttCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACg > 8:54089/1‑149 (MQ=255) ttCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACg > 7:992/1‑149 (MQ=255) tCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGcccc < 2:306178/130‑1 (MQ=255) tCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGcccc > 1:306178/1‑130 (MQ=255) cTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACg > 4:80620/1‑147 (MQ=255) catgcattgAACCCGAGGCCGCTTTGCGGA‑‑CCCAGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAg > 7:371498/8‑149 (MQ=38) aTCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGa < 6:130776/146‑1 (MQ=255) tctggtcaCCTGGGGGCCGAAACCGGG‑‑CGCGGGGTCAATGGATTGCCATTAACCGCATCCCGAACTTCTGCCGCCCGCCCGGCCTTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAg < 1:325529/141‑1 (MQ=255) attgAACCCGAGGCCGCTTTGCGGC‑‑CCCAGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCg > 1:79502/3‑133 (MQ=38) attgAACCCGAGGCCGCTTTGCGGC‑‑CCCAGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCg < 2:79502/131‑1 (MQ=38) attgAACCCGAGGCCGCTTTGCGGC‑‑CCCAGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGAt > 3:24633/3‑149 (MQ=38) attgAACCAGAGGCCGCTTTGCGGA‑‑CCCACGTTCAATCCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCCGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTCGCATGCAGCCCCTTCAGCGCAGGATTGACGGAGTCGAt > 8:221269/3‑149 (MQ=255) tgAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTc < 4:13500/144‑1 (MQ=255) tgAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATcc < 7:43160/149‑1 (MQ=255) gAACCCGAGGCCGCTTTGCGGC‑‑CCCAGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATcc < 4:24633/148‑1 (MQ=255) acatGGGGCCGGAATGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCTCAGCGCGAACTTCTGCTGCACGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGt < 8:221239/145‑1 (MQ=255) ccTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCGATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTAc < 8:138070/149‑1 (MQ=255) cTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTAcc < 5:277423/149‑1 (MQ=255) ggggCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCACCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTc > 4:148741/1‑149 (MQ=255) | CCTGATCGACACCCGCGCCAGCCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATG‑‑GCGAGGTCGAAGACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGC‑‑CTCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGC‑‑TGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTC > NC_002947/2469696‑2469991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |