Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,574,852 A→C 7.0% D10A (GAC→GCC)  PP_2258 → sensory box protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,574,8520AC 7.0% 164.1 / 2.8 56D10A (GAC→GCC) PP_2258sensory box protein
Reads supporting (aligned to +/- strand):  ref base A (22/30);  new base C (2/2);  total (24/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01

CCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCAATTCCGGGCTGCATGAAC  >  NC_002947/2574707‑2574992
                                                                                                                                                  |                                                                                                                                            
cccAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGAcgc                                                                                                                                           <  6:241628/149‑1 (MQ=255)
cccAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGAcgc                                                                                                                                           >  5:309164/1‑149 (MQ=255)
 ccAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGAcgcg                                                                                                                                          >  3:199890/1‑149 (MQ=255)
  cAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCgg                                                                                                                                         <  5:71015/149‑1 (MQ=255)
  cAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCgg                                                                                                                                         >  8:188922/1‑149 (MQ=255)
       caGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGGGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCcgcg                                                                                                                                    <  3:371097/149‑1 (MQ=255)
        aGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGa                                                                                                                                   >  3:17592/1‑149 (MQ=255)
        aGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGCGTCCACGGCcgc                                                                                                                                     <  8:201142/147‑1 (MQ=255)
        aGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGCGTCCACGGCcgc                                                                                                                                     >  7:201142/1‑147 (MQ=255)
            cccATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGCGTCCACGGCcgcgcgata                                                                                                                               <  5:121206/149‑6 (MQ=255)
              cATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCtttt                                                                                                                             >  3:52904/1‑149 (MQ=255)
               aTAGCGCCACCGCCGCCGCCGCGCGCGGTACCGATCGGGAACCCGTGG‑GCGCCGGCTTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTc                                                                                                                            <  4:310096/149‑1 (MQ=255)
               aTAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGTCGCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCtttt                                                                                                                             >  1:94920/1‑149 (MQ=255)
                    gcCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGaaa                                                                                                                       <  4:17592/149‑1 (MQ=255)
                      cAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAAcc                                                                                                                     <  7:217807/149‑1 (MQ=255)
                      cAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAAcc                                                                                                                     <  7:212053/149‑1 (MQ=255)
                        aCGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCGGCGATCTTTTCGGAAACCGa                                                                                                                   >  4:383505/1‑149 (MQ=255)
                         cgccgccgcCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGAc                                                                                                                  <  5:124696/149‑1 (MQ=255)
                         cgccgccgcCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGAc                                                                                                                  <  7:320988/149‑1 (MQ=255)
                                gccTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTg                                                                                                           <  3:399230/149‑1 (MQ=255)
                                   tCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTc                                                                                                                            <  8:87515/129‑1 (MQ=255)
                                   tCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTc                                                                                                                            >  7:87515/1‑129 (MQ=255)
                                    cgcgcgGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGaa                                                                                                       >  5:307167/1‑149 (MQ=255)
                                     gcgcgGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGaa                                                                                                       <  7:188922/148‑1 (MQ=255)
                                        cgGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATc                                                                                                   <  6:56309/149‑1 (MQ=255)
                                               gAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACg                                                                                            >  2:257552/1‑149 (MQ=255)
                                                 aCTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTc                                                                                          <  6:309164/149‑1 (MQ=255)
                                                     gAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATc                                                                                      <  6:348306/149‑1 (MQ=255)
                                                         acGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATcagca                                                                                  <  4:199890/149‑1 (MQ=255)
                                                          cGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATcagcag                                                                                 <  4:52904/149‑1 (MQ=255)
                                                                 cgcCGGATTGCGCGCCTTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTgc                                                                           <  6:199185/149‑1 (MQ=255)
                                                                 cgcCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGACACCGCCCTGCGTGGGAACATCACCTACGTCCATCGGCAGTTCTg                                                                            >  4:371159/1‑148 (MQ=255)
                                                                  gcCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTc                                                                                                                            >  2:51833/1‑99 (MQ=255)
                                                                  gcCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTc                                                                                                                            <  1:51833/99‑1 (MQ=255)
                                                                           cgcgcCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCgg                                                                 >  1:392137/1‑149 (MQ=255)
                                                                                  tggtggAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAg                                                          >  3:206227/1‑149 (MQ=255)
                                                                                       gAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGt                                                      >  6:113175/1‑148 (MQ=255)
                                                                                       gAGCGCTTCAACCGCTAAGGCAGGATGCTTAATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGt                                                      <  3:64608/148‑1 (MQ=255)
                                                                                         gcgcTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAg                                                   <  5:113175/149‑1 (MQ=255)
                                                                                                   cGCTAAGGCAGGATGGTTTATGGATGATAACTATCGGGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATcag                                                                                    <  1:382137/106‑1 (MQ=255)
                                                                                                   cGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTgg                                         <  1:21432/149‑1 (MQ=255)
                                                                                                    gCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTggg                                        >  5:209757/1‑149 (MQ=255)
                                                                                                        aGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTggggg                                      <  2:392137/147‑1 (MQ=255)
                                                                                                            aGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAacc                                >  3:367417/1‑149 (MQ=255)
                                                                                                              gATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCTACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAaccac                              <  6:307167/149‑1 (MQ=255)
                                                                                                              gATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGAGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAaccac                              >  8:341280/1‑149 (MQ=255)
                                                                                                               aTGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCTGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAaccacc                             <  3:383505/149‑1 (MQ=255)
                                                                                                                       tGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCCCCGCATCCt                      >  8:183776/1‑148 (MQ=255)
                                                                                                                         gatgatAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCa                    <  3:371159/148‑1 (MQ=255)
                                                                                                                            gatAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCAATTc                >  7:55529/1‑149 (MQ=255)
                                                                                                                               aaCTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTc                     >  7:191089/1‑141 (MQ=255)
                                                                                                                               aaCTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTc                     <  8:191089/141‑1 (MQ=255)
                                                                                                                                 cTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCAATTCCGGGc           >  3:38546/1‑149 (MQ=255)
                                                                                                                                  tATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCAATTCCGGGCt          <  4:367417/149‑1 (MQ=255)
                                                                                                                                    gatcgcgGCCGCGTCCACGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCAATTCCGGGCTg         >  2:277118/4‑148 (MQ=255)
                                                                                                                                          ggCCCTGGACGCGGCCGCGATCTTTTCTGAAACCGACCTGCGTGGTAACATCACCTACCTCAATCATCAGTTCTGCAGCATCTCGGTCTACATCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCAATTCCGGGCTGCATGAAc  <  2:94920/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                            
CCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGTGT‑GCGCCGGATTGCGCGCCCTGGTGGAGCGCTTCAACCGCTAAGGCAGGATGCTTTATGGATGATAACTATCGCGCGGCCGTGGACGCGGCCGCGATCTTTTCGGAAACCGACCTGCGTGGGAACATCACCTACGTCAATCAGCAGTTCTGCAGCATCTCGGGCTACAGCCGTGAGGAACTGCTGGGGGCCAACCACCGCATCCTCAATTCCGGGCTGCATGAAC  >  NC_002947/2574707‑2574992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑