Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,721,398 | A→C | 8.7% | intergenic (‑360/‑82) | PP_2381 ← / → PP_2382 | hypothetical protein/putative transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,721,398 | 0 | A | C | 8.7% | 130.6 / 5.3 | 46 | intergenic (‑360/‑82) | PP_2381/PP_2382 | hypothetical protein/putative transporter |
Reads supporting (aligned to +/- strand): ref base A (17/25); new base C (2/2); total (19/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
ATGCCGTCGGGTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCTTTTCCAAATGTG > NC_002947/2721250‑2721546 | aTGCCGTCGTGTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTTCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCa < 1:272771/149‑1 (MQ=255) ccGTCGGGTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAAtc < 1:169429/149‑1 (MQ=255) gggTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAAt < 8:44521/149‑1 (MQ=255) tCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGATTGCCAAATATTGGCCAACTCAATcta < 3:247763/149‑3 (MQ=38) cATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTc < 4:69806/148‑1 (MQ=255) cATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGATTGCCAAATATTGGCCAACTCAATctaa < 2:65083/146‑4 (MQ=38) aTTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCa > 4:136959/1‑148 (MQ=255) aaaGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGa < 3:311908/149‑1 (MQ=255) aGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGt < 7:139996/149‑1 (MQ=255) aGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGt < 5:138419/149‑1 (MQ=255) ggTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCa > 4:382184/1‑149 (MQ=255) gtAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGaa < 6:415647/148‑1 (MQ=255) tAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATc > 4:26978/1‑149 (MQ=255) ggAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAAtag > 1:265023/1‑120 (MQ=255) ggAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCg < 2:265023/122‑1 (MQ=255) ggAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCt < 6:121081/148‑1 (MQ=255) ggAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCt > 7:380032/1‑148 (MQ=255) gAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTg > 5:178517/1‑148 (MQ=255) aaaTTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCGCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCaa < 2:328877/149‑1 (MQ=255) ttCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATc > 8:132589/1‑148 (MQ=255) cGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCaa < 3:136959/148‑1 (MQ=255) cTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGccc < 1:181558/122‑1 (MQ=255) cTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGccc > 2:181558/1‑122 (MQ=255) tGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAg > 7:67048/1‑148 (MQ=255) aTTTTCGCTTGCAGATAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATGCTTGCCGAGTCTTAGATTGAGTTGGCCATTATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGa < 5:411482/148‑1 (MQ=255) aTTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAg < 8:237735/146‑1 (MQ=255) cGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGAt < 8:67048/148‑1 (MQ=255) ttGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCg > 4:146754/1‑149 (MQ=255) aaGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGaa < 5:216460/149‑1 (MQ=255) ggCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTAccc < 1:305766/148‑1 (MQ=255) gCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGc < 3:26978/149‑1 (MQ=255) gttgttACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTa < 7:132589/149‑1 (MQ=255) cAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGa < 8:380032/149‑1 (MQ=255) aaCTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCAATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGa > 7:225300/1‑148 (MQ=255) tttCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACAtt > 4:161551/1‑149 (MQ=255) tttCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACAtt > 1:406643/1‑149 (MQ=255) ttCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGcc > 7:330040/1‑122 (MQ=255) ttCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGcc < 8:330040/122‑1 (MQ=255) tCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTg < 7:46413/148‑1 (MQ=255) aTGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTgcg < 3:382184/148‑1 (MQ=255) aTGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTgcg < 2:66093/148‑1 (MQ=255) ttAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGTGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTtcgctgtc > 2:105479/1‑149 (MQ=255) gATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTtcgctgtcgct > 5:132300/1‑149 (MQ=255) gATTGAGATTGCCAAATATTGGCCAACTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTtcgctgtcgct > 2:218972/1‑149 (MQ=255) aTTGAGATTGCCAAATATTGGCCAACTCAATCGGCTCAATGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTtcgctgtcgctg > 4:75567/1‑149 (MQ=255) aGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGc < 6:178517/148‑1 (MQ=255) cAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCtt > 1:7149/1‑149 (MQ=255) aaTCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCTTTTCCAAAtgtg < 3:161551/149‑1 (MQ=255) | ATGCCGTCGGGTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCTTTTCCAAATGTG > NC_002947/2721250‑2721546 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |