Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,741,751 | T→G | 7.9% | L1377W (TTG→TGG) | PP_2395 → | leucine‑rich repeat‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,741,751 | 0 | T | G | 7.9% | 148.3 / 5.1 | 51 | L1377W (TTG→TGG) | PP_2395 | leucine‑rich repeat‑containing protein |
Reads supporting (aligned to +/- strand): ref base T (20/27); new base G (2/2); total (22/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.72e-01 |
GCTAGACCTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAGGCGCATC > NC_002947/2741605‑2741894 | gCTAGACCTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTg > 5:326962/1‑148 (MQ=255) cTAGACCTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGc < 1:391652/148‑1 (MQ=255) cTAGACCTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCa < 1:296245/149‑1 (MQ=255) ccTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTgg < 2:118870/149‑1 (MQ=255) ccTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTg < 4:112956/148‑1 (MQ=255) cTGGGCAGGCGTTTATGGCGCCTGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCAATGGCAGGtcga < 1:233938/149‑4 (MQ=255) cTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCAATGGCAGGtcga < 2:284332/149‑4 (MQ=255) gggCAGGCGTTTATGACACCAGAATACAGTAGACCTGTTCGCTACCCAATGGGCGCTACAGCATAGCAGGGCGCTGAAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCTATTGCAGGTgg > 8:60380/1‑146 (MQ=255) gCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAAt > 2:121990/1‑147 (MQ=255) gCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAAt > 6:405187/1‑147 (MQ=255) gCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAAt > 7:362096/1‑147 (MQ=255) gCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGa < 2:118275/149‑1 (MQ=255) ttATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCtt > 1:266203/1‑149 (MQ=255) tGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTc < 6:229990/148‑1 (MQ=255) gcgcCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCtt < 3:311602/148‑1 (MQ=255) cgcCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGc < 5:405187/149‑1 (MQ=255) aGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCt < 5:109913/135‑1 (MQ=255) aGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCt > 6:109913/1‑135 (MQ=255) gTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAAt > 4:302097/1‑125 (MQ=255) gTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAAt < 3:302097/125‑1 (MQ=255) tAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGtt < 5:210602/149‑1 (MQ=255) ccTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTgg < 8:362096/149‑1 (MQ=255) ttCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATg < 6:326962/148‑1 (MQ=255) gCTACCCGATGGGCGCTACAGCGTGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGa > 1:361183/1‑149 (MQ=255) tACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGAcc > 2:325674/1‑149 (MQ=255) ccGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTg < 5:244302/149‑1 (MQ=255) aTGGGCGCTACAGCGTGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGcac < 2:361183/149‑1 (MQ=255) cgcTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCa < 1:6580/149‑1 (MQ=255) cTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCCCAAGCaga < 5:375637/149‑1 (MQ=255) cTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCaga < 7:255967/149‑1 (MQ=255) cATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCAGGATGCGGACCTTGCACAAGCAGAGGCttc > 4:301702/1‑147 (MQ=255) tGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCAAAAGAATAGGCtgcgg > 5:117939/1‑149 (MQ=255) gCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCtgcggtg > 3:273434/1‑149 (MQ=255) aGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCtgcggtgcg < 2:377056/149‑1 (MQ=255) gggCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCtgcggtgcgg < 4:273434/149‑1 (MQ=255) ggCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCTATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCggg < 7:60380/149‑1 (MQ=255) cTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATg > 3:54453/1‑148 (MQ=255) agCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAAcccc > 6:184753/1‑149 (MQ=255) ttGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGc < 4:248519/149‑1 (MQ=255) tgggCTTTCAGGAGCGGGCTGAGGTCGTGGCTCGACCTGCAATTGCAGGTGGTATAAATTAGCTTTCTTGCTATCTCAGGCGTCTTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTgt < 1:325674/147‑2 (MQ=255) tttCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCt > 5:18293/1‑149 (MQ=255) ggCTGAGGGAGTGTCTCGAGCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGGGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGAc < 3:301702/149‑1 (MQ=255) aGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGa < 5:184753/149‑1 (MQ=255) tcGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGc > 2:104793/1‑147 (MQ=255) tcGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGc < 1:104793/147‑1 (MQ=255) ccaCCTGCAATGGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAgg > 3:27434/3‑149 (MQ=255) gACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAGgc > 6:276282/1‑149 (MQ=255) gACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCCGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAGgc > 5:76239/1‑149 (MQ=255) caCCTGCAATGGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAGgc > 8:204801/2‑149 (MQ=255) cTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAGGCGCa < 5:276282/149‑1 (MQ=255) gCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAGGCGCATc > 5:110594/1‑149 (MQ=255) | GCTAGACCTGGGCAGGCGTTTATGGCGCCAGGATGCAGTAGACCTGTTCGCTACCCGATGGGCGCTACAGCATGGCAGGGCGCTGGAAGGAAGCGAGGTGGGGTTGGCTTTCAGGATCGGGCTGAGGGAGTGTCTCGACCTGCCATTGCAGGTGGGAGAAATGAGCTTTCTTGCGATCTCAGGCGTTCTGGATGCGGACCTTGCACAAGCAGAGGCTGCGGTGCGGGATGCAGAAACCCCGGAAGAGGTTGCCCGCTCCATGGTTGACCGTGAATTCTGGCAGGCGCATC > NC_002947/2741605‑2741894 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |