Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,892,031 | G→A | 6.6% | A246V (GCC→GTC) | PP_2547 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,892,031 | 0 | G | A | 6.6% | 167.6 / 2.2 | 60 | A246V (GCC→GTC) | PP_2547 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (32/24); new base A (2/2); total (34/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.23e-01 |
CTGATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCATCTCTTCCTCCAGCGTCTGCCGCGTCACC > NC_002947/2891888‑2892177 | cTGATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCAcc > 5:195614/1‑148 (MQ=255) cTGATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCAcc > 6:315278/1‑148 (MQ=255) cTGATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGACAcc > 3:16452/1‑148 (MQ=255) cTGATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATAGACGATCGGCAATGCACACACCCGCGCATCGACAcc > 3:21909/1‑148 (MQ=255) cTGATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCACCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCAcc > 6:47757/1‑148 (MQ=255) gATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGa > 5:394618/1‑148 (MQ=255) gATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACAACCGCGCATCGGCACCGaa > 1:20955/1‑149 (MQ=255) aTCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGagc > 5:358498/1‑147 (MQ=255) gCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTccgc > 7:209135/1‑149 (MQ=255) ccTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGACACCGAACTccgcc < 4:21909/149‑1 (MQ=255) ccTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGACACCGAACTccgcc < 4:16452/149‑1 (MQ=255) cacCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTccgccgc < 5:315278/147‑1 (MQ=255) acCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTccgccgccg > 8:35914/1‑148 (MQ=255) acCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGa < 8:103207/149‑1 (MQ=255) cGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACAccacgcc > 1:201632/1‑148 (MQ=255) cAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATg < 6:195614/148‑1 (MQ=255) cAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGc < 8:209135/149‑1 (MQ=255) cAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGc < 1:2258/149‑1 (MQ=255) aGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACAccacgcccac > 4:301111/1‑140 (MQ=255) aGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACAccacgcccac < 3:301111/140‑1 (MQ=255) aGGAAAGTCACCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCTGCCGCCGACACCACGCCCACGCCAATGcc < 5:47757/149‑1 (MQ=255) gAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGACTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCAACGAACTCCGCCGCCGACACCACGCCCACCCCAATGccaa > 4:107336/1‑147 (MQ=255) gAAAGTCGCCACCACCCGGCGCGTACGCTGCCCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTa > 7:352971/1‑149 (MQ=255) tCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTaccac > 7:350885/1‑148 (MQ=255) tCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTaccac > 6:175497/1‑148 (MQ=255) gCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTaccaccac > 5:62460/1‑149 (MQ=255) caccCGGCGCGTACGCTGCTCGCTAAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGACCTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCt > 5:327474/1‑148 (MQ=255) caccCGGCGAGTACGATGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCt < 6:327474/148‑1 (MQ=255) ggCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCAcgc < 2:20955/149‑1 (MQ=255) ggCGCGTACGCTGCGCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCAcgc < 4:401597/149‑1 (MQ=255) cgcgTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACgcgc < 2:201632/149‑1 (MQ=255) tACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCt < 4:110700/125‑1 (MQ=255) tACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCt > 3:110700/1‑125 (MQ=255) cGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTc < 6:358498/149‑1 (MQ=255) ctcgctcAGGCCCACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCTCGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGc < 6:134682/149‑1 (MQ=255) cgctcAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCt > 6:229409/1‑149 (MQ=255) cgctcAGGCACACCAGGGACTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGACAATGCCTACCACCACCGCTTAACCCGCAGCTACCAGGCCt > 4:69983/1‑149 (MQ=255) ctcAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACCCCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTc > 8:60442/1‑149 (MQ=255) tcAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTcc > 7:236539/1‑149 (MQ=255) acCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGAt < 8:236539/149‑1 (MQ=255) acCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGAt > 4:42289/1‑149 (MQ=255) ccAGGGTCTCGGTCAAATGCCGGTGGCAATCGACGATCGGCAATGCACACACCCTCGCATCGGCAGCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATc < 3:107336/149‑1 (MQ=255) gTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTgc < 7:60442/149‑1 (MQ=255) ggTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTgcgc < 6:62460/146‑1 (MQ=255) cAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATcc > 4:27283/1‑149 (MQ=255) gCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGc < 6:394618/147‑1 (MQ=255) aaTCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGt > 6:68457/1‑149 (MQ=255) aaTCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGt > 7:199650/1‑149 (MQ=255) aaTCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGt > 2:78623/1‑149 (MQ=255) aaTCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGt > 2:327767/1‑149 (MQ=255) aaTCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACGCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGt > 1:288366/1‑149 (MQ=255) aTCGACGATCGGCACTGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCTCCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGTTCGCTGCGCGTATCCGCAGGCCGGCACGtt < 3:69983/149‑1 (MQ=255) gacgaTCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCa < 5:229409/149‑1 (MQ=255) acgaTCGGCAATGCACACACCCGAGCATCGGCACCGCACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCTCCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTTCGCGTATCCGCAGGCCTGCACGTTGCAt < 8:350885/149‑1 (MQ=255) gCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCATCTCTtcc > 2:124606/1‑149 (MQ=255) gCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCATCTCTtcc < 8:199650/149‑1 (MQ=255) gCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCGCCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCATCTCTTCCTCCAg > 2:178645/1‑149 (MQ=255) acacacCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCATCTCTTCCTCCAGCg > 6:71630/1‑149 (MQ=255) cgcATCGGCAACGAACTCCGCCGCCGACACCACGCCCAAGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTACACCTGGATCGCTGCGCGTATCAGCAGGCCGGCACGTTGCATCTCTTCCTCAAGCGTCTGCcgcg > 2:409217/1‑149 (MQ=255) tCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCTGGCCGGCACGTTGCATCTCTTCCTCCAGCGTCTGCCGCGTCAc < 1:78623/149‑1 (MQ=255) ggCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCATCTCTTCCTCCAGCGTCTGCCGCGTCAcc > 8:130519/1‑148 (MQ=255) | CTGATCTGGCCTACACCCCTTCCTCGACCATCTGCAGGAAAGTCGCCACCACCCGGCGCGTACGCTGCTCGCTCAGGCACACCAGGGTCTCGGTCAAATGCCGCTGGCAATCGACGATCGGCAATGCACACACCCGCGCATCGGCACCGAACTCCGCCGCCGACACCACGCCCACGCCAATGCCTACCACCACCGCTTCACGCGCCGCTTCCCGGCCTTCCACCTGGATCGCTGCGCGTATCCGCAGGCCGGCACGTTGCATCTCTTCCTCCAGCGTCTGCCGCGTCACC > NC_002947/2891888‑2892177 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |