Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,030,722 | A→G | 8.4% | Q10R (CAG→CGG) | mgtA → | ATP‑dependent magnesium transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,030,722 | 0 | A | G | 8.4% | 160.1 / 4.8 | 59 | Q10R (CAG→CGG) | mgtA | ATP‑dependent magnesium transporter |
Reads supporting (aligned to +/- strand): ref base A (24/30); new base G (3/2); total (27/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 |
GCGAGTAGAAAGTTCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCTCGCCAACCTCGATGCCAG > NC_002947/3030581‑3030863 | gcgAGTAGAAAGTTCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAg < 8:364499/149‑1 (MQ=255) gTAGAAAGTTCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTG‑CTCCTGCCGCTGCGGCGGCACGacac < 3:214163/149‑4 (MQ=255) gAAAGTTCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGca > 8:157439/1‑147 (MQ=255) aGTTCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCa < 5:412093/149‑1 (MQ=255) gTTCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCaa > 5:323669/1‑149 (MQ=255) ttCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAAc < 2:368583/149‑1 (MQ=255) cTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCTGCGGCGGCACGac < 4:248704/136‑2 (MQ=255) cTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCTGCGGCGGCACGac > 3:248704/1‑135 (MQ=255) tGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGAc > 4:196552/1‑149 (MQ=255) gCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGCCCCGACATGCCTTCGTTCCCCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGCCt > 8:195709/1‑149 (MQ=255) gCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACt > 2:17299/1‑149 (MQ=255) ccGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCAAAGCAACATGACTg > 7:94222/1‑149 (MQ=255) aaCTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGa < 5:413654/125‑1 (MQ=255) aaCTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGa > 6:413654/1‑125 (MQ=255) aaCTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGcac < 8:75410/129‑1 (MQ=255) aaCTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGcac > 7:75410/1‑129 (MQ=255) aCTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATAc < 6:224676/149‑1 (MQ=255) ccGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAACACAGCAACATGACTGTCAAATACCGt < 1:17299/148‑1 (MQ=255) cGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTaa < 4:232461/149‑1 (MQ=255) cGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTaa < 2:291378/149‑1 (MQ=255) gACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTaa > 7:111975/1‑148 (MQ=255) tcGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACAcc < 7:89145/147‑1 (MQ=255) ggCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCa < 3:196552/148‑1 (MQ=255) ggCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCCTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCAt < 2:80973/149‑1 (MQ=255) gCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATc < 3:222795/149‑1 (MQ=255) gCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACAGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATc > 4:53789/1‑149 (MQ=255) aGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCgg > 3:266716/1‑149 (MQ=255) ggACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGcc > 8:274502/1‑148 (MQ=255) cagacaACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAgg < 3:225665/149‑1 (MQ=255) cagacaACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAgg < 3:53789/149‑1 (MQ=255) agacaACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGc < 4:266716/149‑1 (MQ=255) aaCTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCACATCGGCCAAGGCCGaa > 8:58374/1‑149 (MQ=255) aCTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAAc < 5:375906/149‑1 (MQ=255) cTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAAcg > 1:103344/1‑149 (MQ=255) tCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCga < 8:111975/149‑1 (MQ=255) gAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAATGCCGAACGCGAGAc < 8:94222/149‑1 (MQ=255) gAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGAc > 3:271082/1‑149 (MQ=255) aaaGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGAcc > 6:252522/1‑149 (MQ=255) gAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGc < 6:323669/149‑1 (MQ=255) aCCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCt < 7:157439/149‑1 (MQ=255) cAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCgg > 2:34491/1‑122 (MQ=255) cAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCgg < 1:34491/122‑1 (MQ=255) cAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCaa < 4:199528/126‑1 (MQ=255) cAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCaa > 3:199528/1‑126 (MQ=255) aGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTc > 1:114571/1‑149 (MQ=255) gCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCt > 2:186496/1‑145 (MQ=255) gCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCt < 1:186496/145‑1 (MQ=255) aCCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGccc > 2:372264/1‑149 (MQ=255) ccTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAgcgcg < 7:103184/149‑1 (MQ=255) ccTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAgcgc < 5:252522/148‑1 (MQ=255) cGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTgg < 1:372264/149‑1 (MQ=255) ccTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCg < 4:351763/149‑1 (MQ=255) aGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGt < 4:271082/147‑1 (MQ=255) aaaCGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCt > 8:299831/1‑149 (MQ=255) tgtgtCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCTCGCCAACCt > 6:316046/1‑149 (MQ=255) tcctGCCGCTGCGGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCTCGCCAACCTCGAt > 6:192833/4‑149 (MQ=255) cGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCTCGCCAACCTCGATg > 4:345728/1‑149 (MQ=255) ctGCCGCTGCGGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCTCGCCAACCTCGATGc > 7:284968/2‑149 (MQ=255) ccgccgCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCTCGCCAACCTCGATGCCAg < 7:274502/149‑1 (MQ=255) | GCGAGTAGAAAGTTCGCTGCCGACACAACTTCCGACTCTCGGCAGCGGACAGACAACTGTCGGAAAGAACCAGCATTATTCAGCGACCCGACATGCCTTCGTTCACCGCCTGAGTGAAACGTCTGTGTGTCGTGCCGCCGCAGCGGCAGGAGCACAGCAACATGACTGTCAAATACCGTAACACCTCATCGGCCAAGGCCGAACGCGAGACCCGCCTGTCCACCCGCGCCGCCCGTGAAGCGCGCAATGGCCTGGCGGTCACCCTCGCCAACCTCGATGCCAG > NC_002947/3030581‑3030863 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |