Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,048,605 | A→C | 12.5% | intergenic (+60/‑236) | PP_2661 → / → PP_2662 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,048,605 | 0 | A | C | 12.5% | 126.0 / 11.2 | 56 | intergenic (+60/‑236) | PP_2661/PP_2662 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (24/25); new base C (3/4); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.39e-01 |
GGATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGCCCCAAAG > NC_002947/3048461‑3048749 | ggATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGccc > 2:189075/1‑149 (MQ=255) ggATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCAAGGAGATTCCGCTCAGATAATGAAATTGGGGCTGCTTTGCGGCCCTTCGCGCGCTCGccc > 5:75683/1‑149 (MQ=255) tgCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCTCGCCCGCGaa < 1:290327/149‑1 (MQ=255) tgCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGaa < 2:138334/149‑1 (MQ=255) gCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGTGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAg > 8:287041/1‑149 (MQ=255) cAGGCACGGCGGGCCTGGCAGGAACCGCACCTTTATCTAATGCCCGCTTGCCAGCGTTCGCAGGCAATGGCTTCTTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCGGCCCTTCGCGGGCTCGCCCGCGAAg < 6:75683/148‑1 (MQ=255) aGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAggg < 1:189075/149‑1 (MQ=255) cACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGctg < 8:294445/149‑3 (MQ=255) gCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAg < 2:47928/149‑1 (MQ=255) gcctggcAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAggcgg < 2:37608/149‑1 (MQ=255) gcctggcAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAggcgg > 6:343111/1‑149 (MQ=255) gcttgcagcaACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAggcggc > 6:152451/5‑149 (MQ=255) ctggcAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCTCGCCCGCGaa > 1:353267/1‑133 (MQ=255) ctggcAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCTCGCCCGCGaa < 2:353267/133‑1 (MQ=255) ctggcAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGcc > 6:114969/1‑149 (MQ=255) gcagcaACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGccc < 5:114969/147‑1 (MQ=255) aaCCGCACCGTTATGAAATGCCCGCTTACCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGttca < 1:305471/149‑1 (MQ=255) aCCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAt > 5:22108/1‑149 (MQ=255) aTGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGATGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTAtt > 6:16361/1‑149 (MQ=255) gAAATGCCCCCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCTGGAGATTCCGCTCAGATAAAGTAATTGGGGCTGCTTTGCACCCCTACGCTGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGATCATTAAAT‑CGAATTg > 8:62260/1‑148 (MQ=255) aTGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATAc < 5:377523/149‑1 (MQ=255) cccGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCg > 8:379985/1‑149 (MQ=255) cGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTTGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGCCCCCGGTTCATTCAATGGGGATAGATACCCGc > 1:139635/1‑149 (MQ=255) ccAGCGTTCGCAGGAAGTGGCGTCCTGAAGCCAGGAGATTCCGCGCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCAc < 8:67081/149‑1 (MQ=255) ttCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTcctgc < 7:287041/149‑1 (MQ=255) cAGGCACTGGCTTCATTAAGCCAGGAGATTCCGCTCAGATAATGTATTTGGGGCTGCTTTGCAGCCCTTCGCGGGGGAGCCCGCGAAGGGCCTCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGa < 2:139635/149‑1 (MQ=255) aGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAg < 5:343111/149‑1 (MQ=255) gCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGTGCGAGACCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CTTATTGATACACGCCTGCCACTCCTGCCTGAGc > 2:122853/1‑148 (MQ=255) aCTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCa > 7:167748/1‑148 (MQ=255) aCTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCa > 2:305047/1‑148 (MQ=255) gCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATaa < 1:179824/147‑1 (MQ=255) gCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGACCCATAAGt > 8:71967/1‑149 (MQ=255) gAAGCCAGGAGATTCCGCTCAGATAAGGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGCAGGGCCGCAAGGCGGCCCCGGTTCAGTCAAT‑CGGATTGATACCCGCCTGCCACTCCTGCCTGCGCCATAAGTCTCGAAc > 6:154285/1‑149 (MQ=255) aGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCa < 4:182615/149‑1 (MQ=255) aGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATAccc > 3:263879/1‑108 (MQ=255) ggAGATTCCTCTCAGTTATTGTAATTGGGGCTGCTTTGCAGCCCTGCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGtc < 2:289956/136‑1 (MQ=255) ggAGATTCCCCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTAATTCAAT‑CGTAATGATACACGCCTGCCACTCCTGCCTGAGCCATAACtc > 1:289956/1‑136 (MQ=39) ccGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCa < 8:167748/148‑1 (MQ=255) cGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAg < 7:379985/148‑1 (MQ=255) tCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTAc > 4:207834/1‑149 (MQ=255) ataTAATTTATTTGGGGCTGCTTTGCAGCCCTTCGGGGGCGAGCCCGCTAAGGGCCGCAAGGCGGCCCGGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTAc < 6:22108/145‑1 (MQ=255) tGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGAACCGGGAcc > 4:246093/1‑148 (MQ=255) tAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCaaa > 5:237198/1‑149 (MQ=255) tAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGGCTCGAACCAGGA‑CCCAAGCAGGTACCGGGAccc > 4:313924/1‑146 (MQ=255) aTTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATc > 6:173076/1‑149 (MQ=255) tgctTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGcc > 5:318860/1‑149 (MQ=255) ccTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCg < 6:318860/149‑1 (MQ=255) tCGCGGGCTCGCCCGCGAAGGGCTGCAAAGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATc < 7:194014/127‑1 (MQ=255) tCGCGGGCTCGCCCGCGAAGGGCTGCAAAGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATc > 8:194014/1‑127 (MQ=255) cgcgGGCGAGCCCGCTAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGcc < 7:62260/147‑1 (MQ=255) cgcgGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGccc < 3:207834/148‑1 (MQ=255) gcgGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGcccc > 7:227600/1‑148 (MQ=255) cgGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGCCCCaa < 7:71967/149‑1 (MQ=255) gggCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGCCCCaaa < 5:152451/149‑1 (MQ=255) gCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGCCCCAAAg < 1:305047/149‑1 (MQ=255) gCGAGCCCGCGAAGGGACTCAAGGCGGCCCAGGTTCATTCAAT‑CGTATTTATACCCTCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGCCCCaaa < 5:16361/147‑1 (MQ=255) | GGATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAGCCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAAT‑CGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGA‑CCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTACCCTCCCGCCCCAAAG > NC_002947/3048461‑3048749 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |