Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,112,856 | A→T | 8.0% | L97L (CTT→CTA) ‡ | PP_2727 ← | C factor cell‑cell signaling protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,112,856 | 0 | A | T | 8.0% | 138.7 / 2.9 | 50 | L97L (CTT→CTA) ‡ | PP_2727 | C factor cell‑cell signaling protein |
Reads supporting (aligned to +/- strand): ref base A (16/29); new base T (2/2); total (19/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.18e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.45e-01 |
CGGGTGCCGACGCAGCAGCGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCTGTGAACAAGGTATCCAGCGCAGGGC > NC_002947/3112712‑3113001 | cGGGTGCCGACGCAGCAGCGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGATACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCg > 4:280206/1‑149 (MQ=255) ggTGCCGACGCAGCAGCGGCAGCAAATGCTTGAGCAGCAGAACGGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTg < 8:333028/149‑1 (MQ=255) ggTGCCGACGCAGCAGCGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTg > 7:2268/1‑149 (MQ=255) ccGACGCAGCAGCGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGa < 2:381989/149‑1 (MQ=255) ccGACGCAGCAGCGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGATGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACTCTTGGCGTGCTgc < 6:292316/149‑2 (MQ=255) cGACGCTGCAGCGGCTGCAAATGCTTGTGCAGCAGATCAGGGGCGAAACAGTGGGGTGTGAAACTTCTCAGCAACCGCGCCATGTCTAGCTGGGTCTGTGCTTTTTCAG‑GCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGaa < 4:97322/149‑1 (MQ=255) gcagcaGCGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGAcc < 5:151279/149‑1 (MQ=255) gcagcGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCATGCGTGCTGAAGACCAgg < 4:333878/149‑1 (MQ=255) gcGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTc < 3:383697/149‑1 (MQ=255) gcaAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTgg < 4:350324/149‑1 (MQ=255) aaaTGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAGCCCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGt < 1:309886/149‑1 (MQ=255) aaTGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCg < 3:354964/149‑1 (MQ=255) aaTGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCg > 4:354964/1‑149 (MQ=255) ttGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCgcag > 3:347502/1‑147 (MQ=255) cagcagAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGgcgc < 7:21933/149‑1 (MQ=255) aaCAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCt < 7:196146/149‑1 (MQ=255) ggggCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTgcgc < 4:347502/149‑1 (MQ=255) gAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCACGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCa < 4:218622/149‑1 (MQ=255) gAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGc > 2:288091/1‑147 (MQ=255) gttggttgTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGttt < 6:293645/149‑1 (MQ=255) ggttgTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGc < 6:217212/148‑1 (MQ=255) ttgTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGt < 5:413535/149‑1 (MQ=255) ttgTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGt < 3:304169/149‑1 (MQ=255) tgAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGc < 2:361219/148‑1 (MQ=255) aaaCTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTg > 8:311369/1‑149 (MQ=255) gCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCg > 1:279817/1‑148 (MQ=255) tCAGCACCCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCCAGCGTGCTGAAGCCCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGAt > 3:361507/1‑149 (MQ=255) gCAACCCCGCCATGTCTAGCTGGGGCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCgg < 8:2268/149‑1 (MQ=255) tCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCCCGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGa < 6:34325/148‑1 (MQ=255) tCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGa < 5:211811/148‑1 (MQ=255) tCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGa < 3:280206/148‑1 (MQ=255) cTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACGAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTGGCAGTCGATGCGaa < 8:300753/149‑1 (MQ=255) tCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGaa < 5:321547/144‑1 (MQ=255) tCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGaa > 6:321547/1‑144 (MQ=255) gTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGt > 4:269994/1‑149 (MQ=255) cTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTcgc > 1:365422/1‑149 (MQ=255) tttCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTcgcgcg > 7:318712/1‑149 (MQ=255) aG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGaacca > 4:192034/1‑134 (MQ=255) aG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGaacca < 3:192034/134‑1 (MQ=255) aG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGct > 2:181377/1‑149 (MQ=255) ccGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCtg < 2:279817/149‑1 (MQ=255) ccGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCTGTGAAc < 5:126860/149‑1 (MQ=255) ccGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCTGTGAAc < 8:318712/149‑1 (MQ=255) cttcttGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGc < 6:125170/80‑1 (MQ=255) cttcttGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGc > 5:125170/1‑80 (MQ=255) cttcagcaCGCTTGGCGTGCTGCAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCTGTGAACAAGGTATc > 2:192105/4‑147 (MQ=255) gcagcaCGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCTGTGAACAAGGTATCCAgc > 8:348361/1‑149 (MQ=255) cagcaCGCTTGGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAAGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCtgtg < 2:216432/133‑1 (MQ=255) cagcaCGCTTGGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAAGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCtgtg > 1:216432/1‑133 (MQ=255) gCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGAAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCTGTGAACAAGGTATCCAGCGCAGGGc > 1:72637/1‑149 (MQ=255) | CGGGTGCCGACGCAGCAGCGGCAGCAAATGCTTGAGCAGCAGAACAGGGGCGAAACAGTTGGTTGTGAAACTGCTCAGCAACCCCGCCATGTCTAGCTGGGTCAGTGCTTTTTCAG‑CCCGCGCCGGGCCTTCTTGCAGCACGCCAAGCGTGCTGAAGACCAGGTTCAGTTGGTCGCAGCAGGCGCCCACCTGCGCGGCCAGTGTTTGCAGTGCCTGCTCGGATCGGGCGTCGCAGTCGAGGCGAACCAACCGTCGCGCGTGCTCTGTGAACAAGGTATCCAGCGCAGGGC > NC_002947/3112712‑3113001 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |