Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,316,914 | G→C | 7.4% | intergenic (‑117/+56) | ribC ← / ← treSA | riboflavin synthase/trehalose synthase A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,316,914 | 0 | G | C | 7.4% | 168.8 / 4.3 | 54 | intergenic (‑117/+56) | ribC/treSA | riboflavin synthase/trehalose synthase A |
Reads supporting (aligned to +/- strand): ref base G (28/22); new base C (2/2); total (30/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01 |
GGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTCCTCGGTCAAA > NC_002947/3316767‑3317057 | ggCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCgggg > 3:42868/1‑149 (MQ=255) ggACGGCCT‑GACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGc > 8:177265/1‑146 (MQ=255) ggACGGCCT‑GACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGc < 7:177265/146‑1 (MQ=255) gACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAgg < 7:212680/149‑1 (MQ=255) ggCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCCCCGCGCAggcgc < 4:24591/149‑2 (MQ=255) ccTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGgcggcg > 1:342670/1‑149 (MQ=255) gACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCt > 1:149082/1‑149 (MQ=255) tGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTgg < 1:107833/149‑1 (MQ=255) cGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCAATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGCCGGCGTGCTTGTGGGc > 8:274017/1‑148 (MQ=255) tgtACATGGAGTTGCTCCTGGGCACGGAAAAGAACACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGaaa < 3:281109/149‑1 (MQ=255) aTGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGc > 2:236793/1‑140 (MQ=255) aTGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGc < 1:236793/140‑1 (MQ=255) aTGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGt > 5:149005/1‑149 (MQ=255) cTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACgg < 4:42868/149‑1 (MQ=255) tCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACgg > 6:208696/1‑148 (MQ=255) ggCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTCCGACGGCATGGc > 3:218322/1‑149 (MQ=255) aaaaCTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCGCGCCAGAtt > 2:190603/1‑148 (MQ=255) aaaaCTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGAtt > 6:156903/1‑148 (MQ=255) aaCTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATCCa > 5:6252/1‑148 (MQ=255) aCTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCaaa < 6:274427/149‑1 (MQ=255) ttCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACa > 2:120511/1‑149 (MQ=255) ttCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACa > 5:141726/1‑149 (MQ=255) cGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGc < 6:149005/149‑1 (MQ=255) cccGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGtt > 2:278066/1‑149 (MQ=255) ccGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTg < 2:149082/149‑1 (MQ=255) cGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGa < 1:278066/149‑1 (MQ=255) gcgcAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGAGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGa < 5:208696/148‑1 (MQ=255) gggatgttGCAAGTGCTGGCTTCGTGGCTGGCAAGCCGGCTTGGGTGTGTGGCGGCTGCGGGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATc < 3:204659/140‑1 (MQ=255) gTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCa < 6:141726/149‑1 (MQ=255) gCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGca > 3:74636/1‑147 (MQ=255) cAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCaaa < 7:159475/115‑1 (MQ=255) cAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCaaa > 8:159475/1‑115 (MQ=255) aCCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGcc > 1:203386/1‑149 (MQ=255) cAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTc > 6:51631/1‑149 (MQ=255) ccTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGGCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACgg < 7:274017/148‑1 (MQ=255) tcgcAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGAGCTTGTGCGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAgg > 5:319365/3‑149 (MQ=255) gcAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGtt < 2:342670/149‑1 (MQ=255) aaGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCa > 4:95918/1‑149 (MQ=255) aaGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCa < 5:156903/149‑1 (MQ=255) aaGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTATTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCa > 7:329791/1‑149 (MQ=255) aGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCAc > 7:177224/1‑149 (MQ=255) gCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCg > 6:367669/1‑131 (MQ=255) gCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCg < 5:367669/131‑1 (MQ=255) gCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCAc > 1:210674/1‑148 (MQ=255) ggCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCAt > 3:133253/1‑148 (MQ=255) cTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAg > 1:35208/1‑149 (MQ=255) gAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGcc > 7:374646/1‑149 (MQ=255) acgccgcCTGCCCCGCGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTc > 6:132089/5‑149 (MQ=255) gccgcCTGCCCCGCGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTCCt < 5:132089/147‑1 (MQ=255) gcgcCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTCCt < 5:51631/148‑1 (MQ=255) cgcCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTCCTCg < 2:203386/149‑1 (MQ=255) cgcCTGCCCCGCGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGCCGGCATCGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTCCTCg > 7:108717/1‑149 (MQ=255) gcCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAg < 6:271691/99‑1 (MQ=255) gcCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAg > 5:271691/1‑99 (MQ=255) cgcgGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATCCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTCCTCGGTCaaa < 6:6252/149‑1 (MQ=255) | GGCGGACGGCCTGGACGATGCCGGTGTACATGGAGTTGCTCCTGGGCACGGAAAAGAAAACTTCCGAACGCTATGCCCGTAGCGCAGTAAATGCAAGACCAGGCTTCCTGGCTGGCAAGCCGGCTTGCGAGTCTGGCGCCTGCGCGGGGCAGGCGGCGTGCTTGTGGGCGAAACCGGTTTGCGACGGCATGGCCACGCCAGATTCAAACATGCCCGCTGCTGTTGACGATCCGCAGGCACAGCGCCTCGTACGGGTCCAGGTTCACCATCAGGCGCCCGTCCTCGGTCAAA > NC_002947/3316767‑3317057 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |