Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,775,325 G→C 7.9% P51R (CCC→CGC) ‡ PP_3336 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,775,3250GC 7.9% 277.0 / 11.5 89P51R (CCC→CGC) ‡PP_3336hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (42/39);  new base C (3/4);  total (45/44)
Fisher's exact test for biased strand distribution p-value = 7.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.89e-01

GGGCGCAGCAGCAATGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCT  >  NC_002947/3775179‑3775470
                                                                                                                                                  |                                                                                                                                                 
gggCGCAGCAGCAATGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATgg                                                                                                                                                   <  8:170239/147‑1 (MQ=255)
    gcagcagcaAAGCCCGGGGGCGGACGTCTTCTGGCTAAGTTTGCCGTCCTTGTCCACCATGGCCGGCTGTACGCCGCCCCACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGACCAGGGTACTGGCCATGGGCAATg                                                                                                                                             >  4:81911/1‑149 (MQ=255)
     cagcagcaATGCCGGGGGGCTGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGc                                                                                                                                            <  6:283748/149‑1 (MQ=255)
       gcagcaATGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCa                                                                                                                                          <  6:330919/149‑1 (MQ=255)
         agcaATGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAg                                                                                                                                         >  2:402684/1‑148 (MQ=255)
           caATGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTAc                                                                                                                                      <  8:80435/149‑1 (MQ=255)
           caATGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTAc                                                                                                                                      <  4:14671/149‑1 (MQ=255)
            aaTGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCATTGCCCATGGCCAGTAcc                                                                                                                                     <  4:4268/149‑1 (MQ=255)
            aaTGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCATTGCCCATGGCCAGTAcc                                                                                                                                     <  4:9788/149‑1 (MQ=255)
                cccGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAAGGTACTGGCATTGCCCATGGCCAGTACCCTgg                                                                                                                                 <  6:375867/149‑2 (MQ=38)
                 ccGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGag                                                                                                                                >  6:314995/1‑149 (MQ=255)
                 ccGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGag                                                                                                                                >  2:210257/1‑149 (MQ=255)
                  cGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGagc                                                                                                                               <  7:122364/149‑1 (MQ=255)
                     gggCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGagcagc                                                                                                                            <  1:210257/149‑1 (MQ=255)
                      ggCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAgcagca                                                                                                                           <  2:398435/149‑1 (MQ=255)
                        cGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATg                                                                                                                         <  6:170208/149‑1 (MQ=255)
                          gACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATgg                                                                                                                        >  6:244344/1‑148 (MQ=255)
                          gACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGc                                                                                                                       <  5:118297/149‑1 (MQ=255)
                          gACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGc                                                                                                                       <  8:266818/149‑1 (MQ=255)
                             gTCTTCGGGCTAAGTTTGCCGTCCTTGTCCCTCATGGCAGGCTGTACGCCGCCCGACGAGCAATAACTGCCCTCCAGCAACTGCGCCAGGCTCAGGTCTCCCAGGGTACTGGCCATGTGCAATGCCAGTACCTTGAGCAGCATGGCAag                                                                                                                    <  8:14956/149‑1 (MQ=255)
                             gTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAag                                                                                                                    <  3:219553/149‑1 (MQ=255)
                                ttCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAagcag                                                                                                                 >  5:67712/1‑149 (MQ=255)
                                  cGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAagca                                                                                                                  <  1:204815/146‑1 (MQ=255)
                                    ggCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGcgcc                                                                                                             >  4:398898/1‑149 (MQ=255)
                                       tAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGcgccgc                                                                                                           >  1:273415/1‑148 (MQ=255)
                                          gTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGAcc                                                                                                       >  3:292407/1‑149 (MQ=255)
                                            ttGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCACGCAGCGCCGCGccc                                                                                                       >  8:106004/1‑147 (MQ=255)
                                              gCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCAAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCaga                                                                                                   >  4:332262/1‑149 (MQ=255)
                                               ccGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCagag                                                                                                  <  3:290885/149‑1 (MQ=255)
                                               ccGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCagag                                                                                                  >  7:164277/1‑149 (MQ=255)
                                               ccGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCaga                                                                                                   <  6:301978/148‑1 (MQ=255)
                                                cGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAgg                                                                                                 >  4:176083/1‑149 (MQ=255)
                                                  tCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGtt                                                                                               <  4:292407/149‑1 (MQ=255)
                                                  tCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGt                                                                                                >  2:8280/1‑148 (MQ=255)
                                                       gTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATc                                                                                            <  6:380684/147‑1 (MQ=255)
                                                         ccAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAg                                                                                        >  5:192752/1‑149 (MQ=255)
                                                          cAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAg                                                                                        <  5:244344/148‑1 (MQ=255)
                                                           aGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGgt                                                                                      >  5:287124/1‑149 (MQ=255)
                                                             cATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGgtgc                                                                                    >  5:260533/1‑149 (MQ=255)
                                                                 gCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGgtgcgtgc                                                                                <  2:273415/149‑1 (MQ=255)
                                                                  ccGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGtgcgtgcg                                                                               >  4:232009/1‑149 (MQ=255)
                                                                   cGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCAt                                                                                                                          >  2:2618/1‑105 (MQ=255)
                                                                   cGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCAt                                                                                                                          <  1:2618/105‑1 (MQ=255)
                                                                      cTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTgcgcg                                                                             >  5:381792/1‑147 (MQ=255)
                                                                            gccgccCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCg                                                                      >  5:147926/1‑148 (MQ=255)
                                                                            gccgccCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCg                                                                      >  6:204232/1‑148 (MQ=255)
                                                                              cgccCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCaa                                                                   >  1:151993/1‑149 (MQ=255)
                                                                                 ccGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATgg                                                                <  6:287124/149‑1 (MQ=255)
                                                                                    acgaGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGgcgc                                                             <  6:307552/149‑1 (MQ=255)
                                                                                       aGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATg                                                          <  2:151993/149‑1 (MQ=255)
                                                                                         cAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGtt                                                        >  7:248442/1‑149 (MQ=255)
                                                                                           atatCTGCCCGGCAGCATCTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCTATGCCAGTACCTTGAGCAGCATGGCAAGCTGCGCCGCGACCCAGAGGTTATCCGAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCa                                                      <  3:81911/149‑1 (MQ=255)
                                                                                           aTAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCa                                                      <  1:402684/149‑1 (MQ=255)
                                                                                            tAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAgg                                                                                                 <  2:376217/105‑1 (MQ=255)
                                                                                            tAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAgg                                                                                                 >  1:376217/1‑105 (MQ=255)
                                                                                                   ccGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGCGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGc                                              >  2:276068/1‑149 (MQ=255)
                                                                                                     gCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGc                                              >  8:30576/1‑147 (MQ=255)
                                                                                                     gCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCa                                            <  5:314995/149‑1 (MQ=255)
                                                                                                       cAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGCGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAgg                                          <  1:276068/149‑1 (MQ=255)
                                                                                                           aaCTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAgc                                      >  5:412747/1‑149 (MQ=255)
                                                                                                                 gcCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGc                                >  8:375360/1‑149 (MQ=255)
                                                                                                                     ggCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGTGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTgg                            <  1:310702/149‑1 (MQ=255)
                                                                                                                     ggCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTgg                            <  7:27164/149‑1 (MQ=255)
                                                                                                                      gCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTg                             >  2:128614/1‑147 (MQ=255)
                                                                                                                      gCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGga                           <  6:192752/149‑1 (MQ=255)
                                                                                                                        tCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTg                             >  3:173877/1‑145 (MQ=255)
                                                                                                                        tCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTg                             >  5:161484/1‑145 (MQ=255)
                                                                                                                         cAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTgg                            <  5:88983/145‑1 (MQ=255)
                                                                                                                         cAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTgg                            >  6:88983/1‑145 (MQ=255)
                                                                                                                          aGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGgaga                         <  7:333003/147‑1 (MQ=255)
                                                                                                                           ggTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTc                      <  7:30576/149‑1 (MQ=255)
                                                                                                                            gTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTc                      >  5:41425/1‑148 (MQ=255)
                                                                                                                                cccAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGAtt                       <  3:66463/143‑1 (MQ=255)
                                                                                                                                cccAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGAtt                       >  4:66463/1‑143 (MQ=255)
                                                                                                                                cccAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAg                 <  3:398898/149‑1 (MQ=255)
                                                                                                                                 ccAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAgg                >  6:78921/1‑149 (MQ=255)
                                                                                                                                 ccAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAgg                >  7:321453/1‑149 (MQ=255)
                                                                                                                                   aGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTc              <  6:41425/149‑1 (MQ=255)
                                                                                                                                     ggTACTGGCATTGCCCATGGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCggg                                 >  2:295608/1‑128 (MQ=255)
                                                                                                                                     ggTACTGGCATTGCCCATGGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCggg                                 <  1:295608/128‑1 (MQ=255)
                                                                                                                                     ggTACTGGCATTGCCCATGGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCAt            >  5:342898/1‑149 (MQ=255)
                                                                                                                                     ggTACTGGCATTGCCCATGGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCAt            >  5:84069/1‑149 (MQ=255)
                                                                                                                                       tACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCAt            >  2:270057/1‑147 (MQ=255)
                                                                                                                                       tACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGa          <  6:161484/149‑1 (MQ=255)
                                                                                                                                        aCTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCAGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAg         >  8:316185/1‑149 (MQ=255)
                                                                                                                                           ggCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGc      <  6:412747/149‑1 (MQ=255)
                                                                                                                                              cATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTtc   >  6:416527/1‑149 (MQ=255)
                                                                                                                                               aTGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTtct  >  4:226778/1‑149 (MQ=255)
                                                                                                                                               aTGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTtct  >  6:391282/1‑149 (MQ=255)
                                                                                                                                               aTGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTtct  <  6:381792/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
GGGCGCAGCAGCAATGCCCGGGGGCGGACGTCTTCGGGCTAAGTTTGCCGTCCTTGTCCAGCATGGCCGGCTGTACGCCGCCCGACGAGCAATAACTGCCCGCCAGCAACTGCGCCAGGCTCAGGTCGCCCAGGGTACTGGCCATGGGCAATGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCT  >  NC_002947/3775179‑3775470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑